Pate009976.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720661.1:12668129-12682866[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 8.2e-06 0.00086 20.0 1.0 1 23 224 246 224 246 0.98 2 30 0.0035 0.37 11.8 1.9 1 23 269 292 269 292 0.96 3 30 0.0003 0.031 15.1 1.0 2 23 299 321 298 321 0.96 4 30 0.0014 0.15 13.0 0.5 1 21 341 361 341 362 0.95 5 30 0.0047 0.49 11.4 0.1 2 23 459 480 458 480 0.96 6 30 0.0072 0.75 10.8 0.3 2 23 487 509 486 509 0.87 7 30 0.00015 0.016 16.0 0.1 1 23 579 602 579 602 0.96 8 30 0.031 3.2 8.8 0.4 1 23 608 631 608 631 0.96 9 30 0.16 17 6.6 1.5 1 23 644 666 644 666 0.97 10 30 5.3e-05 0.0056 17.5 0.8 3 23 711 732 709 732 0.96 11 30 0.012 1.3 10.0 1.1 2 23 796 819 795 819 0.94 12 30 4.1 4.3e+02 2.1 0.0 2 23 828 850 828 850 0.83 13 30 0.023 2.4 9.2 0.1 2 23 857 879 856 879 0.95 14 30 1.7e-05 0.0018 19.0 1.2 1 23 887 909 887 909 0.98 15 30 1.9 2e+02 3.1 1.4 2 23 943 966 942 966 0.92 16 30 0.00028 0.029 15.2 3.3 1 23 969 992 969 992 0.97 17 30 0.0072 0.76 10.8 0.4 2 23 999 1021 998 1021 0.95 18 30 0.0042 0.44 11.5 5.1 1 21 1048 1068 1048 1069 0.95 19 30 0.0035 0.37 11.8 1.8 2 23 1083 1104 1082 1105 0.93 20 30 0.33 35 5.5 3.2 1 23 1108 1130 1108 1131 0.95 21 30 0.023 2.4 9.2 1.7 2 23 1138 1161 1137 1161 0.93 22 30 1.3 1.3e+02 3.7 0.2 2 23 1169 1191 1169 1191 0.95 23 30 3.3 3.4e+02 2.4 0.0 2 23 1198 1220 1197 1220 0.88 24 30 0.21 22 6.2 3.1 2 23 1229 1251 1229 1251 0.96 25 30 0.027 2.8 9.0 0.2 2 23 1257 1279 1257 1279 0.95 26 30 3.4e-05 0.0035 18.1 0.5 1 21 1392 1412 1392 1413 0.95 27 30 0.31 32 5.6 0.8 2 23 1513 1535 1512 1535 0.94 28 30 1.2 1.2e+02 3.8 0.3 2 23 1542 1564 1541 1564 0.94 29 30 0.91 95 4.2 2.5 1 23 1575 1597 1575 1597 0.97 30 30 1.5 1.6e+02 3.5 0.3 3 20 1606 1623 1606 1625 0.95
Sequence Information
- Coding Sequence
- ATGGAGTTCAAGGAACGTTACACCGAGCTTTGCAGGCTGTGCGCTTCTTACGATGCTATTAAAATGGACATTTTTGGCCAAGAAGGACGAGATCGACAGCTAGTCGACAAAATTCAGACCTGCCTTCCATTCAAGATTGCAGAAGATGATAGGCTACCTAAATGCGTTTGCTATCGATGCATGTATAACTTGgagaatttttatgatttccGAACAGCGTGCGTTAATGCAGTTGCTTTGCTCGAGAGATGCTTACCACCCTGTCACAGTGATACTGGAGATGGGACACAAAATTCTGGCCATCAGTTTTCTCAACTTCGTTCAGAGCTGCTcaaggagaaagagaatatGCCAATACTAATTCCAGAGGCTCCGATTGTGAATCCAAATGGTGCTTTAGGTACTCCGCCGAGATTGAATTCAGATGGTGAAGCAGATCATGAAATTGAGGAAATACTTTATCAGGGTATCAGCGATGACGGCGCAGATGATCATGAAGATCCAAAATCCGACGAATATGAAATGGACATGGAAACGAATCCAAGTGATTTTTTGGAAATGACATCAATGGTAACAGAAGATGCAGACGATGGCAATGCTGCAAATATCATACCTGCTTCAAATAAAGAATCAACTCTATTTCAACATACTTCAGAACAACACGAAGTCTACGTTTGCTCATTATGCAATAAGGCATTTAGTTCAAAAGGACATTTGTCATTACACGCTAGAATTCATGTTGGCGCCGGTGATATAGTCGGAGAAAAGGTTATCACCGATGATCATACGTCATACAAAAGACCATATCAATGTGATTTATGCAACAAATCGTATTCTACGGCTAAGCATCGATGGGGTCATGTATCTACTACTCATAGGGGGCATCCAGCGGTAACATGCAGATATTGTTCACGGATATATTCAACGAGAACAAATTTAGAAGAGCATATAAAATCGCGTCACGCAGGATTACCTCCGCCACCAGAAATTCCTATACCATATGTTCAACAAgacaataaatttcaatgtaGAACGTGCCCTAAAATGTATACAAATGTTACGGATTTGAATAAACATAGTCGAGTATGCGCTggagataaaaagaaagaattatacAATAAGAATTCTATAACCAAACAAAAAGGGGCTGCTGTTGATACGTCTGATTTGTCGAGTCTTGATTCTGATGATGGTGGAAAAGATTATAGAGATGCAGAAGCTAAATTAGCTAAAAATCCTCAATTAACTATACTCAAACAAGCTctaatgaaaaaagataatCTTAAAAGAGAGCACGAAGAACCCAGGGCGAATCATAAGCCGAAGAAAATATCTAGAACAGACAGCAGTGAAACGGATGGACTAAAGAGGTGGTACTGCGAGAAATGTCCACAGAATTTTATATCTGTAGATAGCTTGAAGGAACACGAAATTACGCACGATGCAGATAAACCTTTTATTTGTATCTTGTGTGACAAGGATTTTACGCTGAAATCATCGTTAAGCAGACACATTATAGCATCCCATGGCGTCGATCCAAGTCCCATTATCGATAGTGATAAATGCTTCAAAAGATTTGCTGCTATTTCACAGGCTTCGAACAACCAAACAGAACTAGGAACTAAGGATAACAACAAAGACATTAACGAATGTTTGTCGTCACTTCAGGATAATCTTGAGAATGAGTCTGATCATGACAGCAGTCCAGAGAATATGATTGAAATCGAGACGGTTTTCGTCTGTGAGATTTGCACCCGTGATTTTAATGATCGCGCTTCGTTATGGCTACATATTAGAGCAACTCATAAAGAGTATGCAGCATTTGCATGTGGCGTTTGCTTGAAAATCTGTGCCGATAACACGCAGTTATTGAACCATGTCAACATGTATCACGGGGGATCTAAGCTACAAGTTTCGGAGCAGAGAAGGTACAGCTGTACAATTTGTGGGCGACAACATGActcaagaaaaaaattgatcactcACGTCTCTATACACAATGTTGACCCCGGATATGATCCTGCCAGTTTCGTTCAACTCaatagtaattattataatgaaaattttaacaGCAACGAAGCTCATGATCAAACAATAGAGTGTGATGGTGACGACAGTGAAAAAATGGATTGCTATATTTGTTACAAGTCTTTTCCTAGCGAGGATCATCTTATTCGTCATCAAAGAAATGCCCACAAGTCGGAACCGCTGGCACCGATGGGAGAGTCTGGTGGAAATGGAAGCGGAACTGGTTCTGTGAGTGGTAATGGGAACCGAGCACagtatcatttatttttcgtatgcGAATTATGTGGTAGTTCTCACCCAAGCAAATGGGAACGCTGGCTTCATGTCAGTAGTTGTCACAGCAATGAGCCTGCTATTAGaTGTGAACGAGATACATGTGGTAAAATCTTCGCCACAAGATCACTGCGGAATGATCACATTCAACATCATTCTGCTCAAGGCGCTTCACCAAACACGTGTGAAATATGTGGTAAACTGTGGGGTAGTCGAGTCGATTATTGGAAACATGTAATGGGTGTCCATTCAGATACGGTGCCTTTAATTTGTGGAGTTTGCTTGAAGGTTTTCCCAGATGTTATTCAACTCAGCAATCATGTTAAAACCAAACATTGGCCACTTACAAATGGGGATTTTAGTTGTGATATTTGCGGCAGACCATACTCCAACAAATCAAAAATGTCTAGGCACAGAAAAATTCATGGGTTGGATGTAGATAGCTATATAAATAACAGTCATGTTCACGAATCAATTAACGATTCGTCGAGGATTGTCGATCATAGCATTCCTGATGCTGATTTAGTTTGTGAAATGTGTTCTAATTTGAAGTTTTCAGACTTAGAAACACTCTGTTATCATAGACGCAACATTCATGGTTTATTCCCATGCGATTTGTGCAATAAATGTTACGGGAGGACTTCACACCTCTGGAAACATGTTAATCGTGTTCATAAGGGACATGAGGATGTCACATGTAGATACTGCTTAAAAACTAGCGCATCGAAGGAACATTTAGCTGCTCATATTGCTAAGATTCATAGGTATGAACCAGAGactaaaaaagaaataaggGAATCGCTAGATTTCAAGTCTGCTAATGTTGACGATGAAACACCCCATCATTGTGAAAAGTGTAATAAAGGCTTTCACAAGCGATATTTATTACGTCGTCACATGAAAGGGTGTCAAAACTATCGTAAAGATCCTGGAGCACTTTTAACAAGGTGCAGGGCTTGCGAAAGGATCTTCAAAGATCGTGCTAGTCTACAAAAACATATAGAAAATCATCATAGCACGTATACTTGTCATTTATGCAACAAAGATGTAACTTCAAAGTTAGGTATTATGACTCACAATAGAGTTCATCACATGAATCATCCTGATTTGACTTGTGATTATAGCAATTGCAAGAAGTTATTCAGGACCAGACAAGACTTGGAATCGCATAGGAAAGATCACAAGTATCATAATATGCCAAATGTTTGTGATTTTTGCGGTGATACCGTAGAAAATAAGCTGAAATTAAAAATGCATATATTATCGTTACACCGAAATGAAATTGGTGTTTCGTGCGGTGTTTGTTTAATTCCAATGAAAGATCCCAAAGAGTTGAAGAGACATGTTGAAGAAATTCATGATCACATTCTTTCAAAGCCAAACACTTGTAAAGTATGCGGAAAGCAATATGCTTCAAAGTGGAAGGCTTTCGATCACACGAAAAAATGTCATGGGAAAGTATTCAGAACTTGTAAACAATGTCTTGCTGTTTTCACCAGAGATGAAGAGCTAAGAAATCATTATGCTAGTATTCACAATGTTCCAAAAGATCAGCTGTCTGGTCTCGATTATCGATTAGAAACGTCAACCGGCAAACCAGATGACTACGAATCAGCAGATTTACTCATTAAGGAAGAACCAGATGATATAGACTTTGATGTTGATCTATGCAACGAAGATTCAAATGAGCGTAAAAGGAAGAGGCCCTTAACGGATACTTTCGATTGTAACCTATGCCATGAGATATTTCTGAACGATGAAACGTTGTCCCAGCATTGTCGTAACGTTCATAATATGAATCCTggtaaaaaatttaaaaaatcagaaaaagtAGGTGCAGGGGTtaaaaagaaattcaagaaCAGAGAAACCTTCGAATGTAAAAACTGTGGGAAACAGTTTTCTACGAAAACATTGTTTTGGAATCATATCAATGTATGTGAAAGACGGAATAGTGTTAATAAAGATAGCGAAAATTGTTTTCCAATGTCAATTCTAGAAGcgcatttgaaaaataataatcaaataaaaaaagaagagccTGACCCTGTTTTAAAtgaatcaaatttgaatataccAGATTTTAACTTGTTTGAAGATATAAACATGCAACTTACGGGTCATAAACCTGTCCCTGATCTGATGCCGATATCTTCAGCAAAAAGACATTCAAGTAACAAATGCTCGCGTAAAGATTCTAGAAAAGTTTACGATGAATCAACGAATACAGAATGTGCTTGTGAAGTTTGCGGAAAACCTTGGCCAGCAAAAAAACATTTGTGGCAACATCTGATTCGTTTTCATAGAGCAGAAGCAGCCGTTACCTGCGGCGTATGCTTGAAACTCTGCCAAACTTACGACGACTTAGCGAATCACTTGAAAGCGGCTCACAAAGCAATTTTGACTCGTGAAGGAAACAATTTTACATGTAAAACTTGCGGAAGATATCACAATGCACGAAGCAAATTATTATTGCATATGAGTATTCATATCAATTATAATGGTAACGAATGGTGTCAGAATTGCCATCAAGGTTTCGATGATggagagaaattgaaagaacaTTTGGTAAGTTGCACCATAAAACAAATTGATTACGATGATCACAGCAACGATGCTGATGTTAGagtaaagaatgaaaatgacaaCGAAGATAAGAGAAGCCTAATAGATGATGATAATTCGTTAATGGAAGAAGTAGAAGAGGTAGAATTTGAGTCAGAAGCAGAAGGTGATGCTACAGAAATTCTCGATGATAGCATTAGTGATAATTCAGAGAGTGAAGCTAGCAATGACAGCATAagcgacgaagaagaaaatgaggaTGAGAATGAAGTTGAAGAAGACGAtgttgatgaagaaaatgaaattgatgatgAGTCTAGAACACACAGTAGAGTGACCGGAGATGTTACCAGTGATTCCCATAAAGATGAGGATTCTGACCATCCTGGTGAAGATTTATCCGTACATAGTGAAAATGATTACATTGATAAGGAAATAAACAATGTTAGCTTCCTCAGTGAAACAGACGACACAAATGTTATGGAGAATGAAGATTGTCAGGATGCCAGACTCCAGGAGCAAAAAAACATTGTAAATACAGTAGAAAGTCTTGGGAAAGAAATTGTCGATGCAAATATAGATGAAGATTCTCAAGAACTTGAAGATAATTCACAAGCCcgaaattttaatgaaaaagaTTTTGAAGATAGACCTTGTGAACTACAAAATCAAGCTCTATTCAAAGAAGAACTTGGGGATTACTTGGATGATGAAGGCCCACCTGTATTGAGCCCAATGGTACCATTGCCTGTGGCTAATGATACAGACAACCCAGCCATGGATCAGTTAGATACAGTCCAGCATAAGTTAATTCCAGTGGTACCTTCGGATCCTGACAAGTTCGCAGCTTTGTGCGAATTAGAGgagattgaaaatcaaatagaaAGAGGCAAATCGTCAATTATAACTTCCAATCTGGTGGAACtcgatgaaaatatgaaagaaagtAAAGATCCAAATGCCACTGTTAATATTTTGGAAGAAATGTTGGAaactgattccgaaaatgaaaaaggaggagaaaaggaATTTCaagatgataatgatgaagCTTCAGAAGTTGAAGACAAAGCTTTTGAAAATGAAGTGGTTTCCGAAAATGAGAATGCAATAATGGAAGtggaagaagcagaagaagaagacggagaagaagaagacgaagaagcagaagaagaagaagaagaagaagaagcagaagaagaagaagaagaagaagaagtagaagaagaaaaagaaaaagaaaaagaagaagaagaagcagaagaaaaggaagaaaaagaagaagaaaaacaagaaggaggagaaggagtagaagaagaagaagaagaagaagaagaagaagaaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagtagaagaaggaggagaaggaggagaagaagaagaagaagaaggagaagaagaaggagaaggaggagaagaagtagaagaagaagaagaagaagaagaagaagaagaagaagaagaagacgaagaagaagaagacgaagaaaaagaaaaaggagaaggagaaggaggagaagaagaaggagaagaagaagaagaagcagaagaagaagcagaagaagaagaagaagtagaagaagaagaagaagaagaagaagaaaaagaagaagaagaagaagaagaaaataatgaaaatggagGTGAAGACGGAGATGGAGACGGAGATAaagatggagaagaaaaagaaaaaaacgacgaagaagaaagaaaagatgaagatgatgatgatgatgatgatgatgataaagatgaaaatgaagataaagataaagatgaagatgaagatgaagatgaagatgatgacgaagatgaagatgaagatgaagaaaaaggaaaagaagaagaagaagatgaagataaagatgaagatgaagatgaagaagaacaaaatgaagaagaagatgaagaagaagaaagtggGAATGGGGGTGAAGAAGttgaagaagcggaagaagaaaatgttCATCCCGACGAAGATACATTAGAAACTTGTGAAGAAGACCAAGAGGATGATAATTTTGAAGGAATTGAGAATGCAATCGATATAACAGATCAAATATTTGCTAGAAATTCCGATGGTGAAATCGAGGATATAGAAACAGGCGATAATACAAACACTGTACAAATACCAAATTTAGACGGAACTGTACTTATGGTGGCGAATGATGCCGACGGTAATCAGATTTTGATACAACGCAATGTTTCTGATTTGCCAAATGAAGATTCGAATCCCGAAGTAACAGAATATATATTAGAAGGTGAAAACGAATATGGAATAGATAACTATGAAGTGGCTTCGAATGACGAGGATGTGACACAACAGTCTGACAATAGTTCTGAGAtttcaaaagaagaaaataatgttGAAGCTATGGAAGACAAGCATATATCGATTATCAGTGCCAAAAGTAAAGTGTCAAGGACGTAG
- Protein Sequence
- MEFKERYTELCRLCASYDAIKMDIFGQEGRDRQLVDKIQTCLPFKIAEDDRLPKCVCYRCMYNLENFYDFRTACVNAVALLERCLPPCHSDTGDGTQNSGHQFSQLRSELLKEKENMPILIPEAPIVNPNGALGTPPRLNSDGEADHEIEEILYQGISDDGADDHEDPKSDEYEMDMETNPSDFLEMTSMVTEDADDGNAANIIPASNKESTLFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDIVGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRTNLEEHIKSRHAGLPPPPEIPIPYVQQDNKFQCRTCPKMYTNVTDLNKHSRVCAGDKKKELYNKNSITKQKGAAVDTSDLSSLDSDDGGKDYRDAEAKLAKNPQLTILKQALMKKDNLKREHEEPRANHKPKKISRTDSSETDGLKRWYCEKCPQNFISVDSLKEHEITHDADKPFICILCDKDFTLKSSLSRHIIASHGVDPSPIIDSDKCFKRFAAISQASNNQTELGTKDNNKDINECLSSLQDNLENESDHDSSPENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICADNTQLLNHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENFNSNEAHDQTIECDGDDSEKMDCYICYKSFPSEDHLIRHQRNAHKSEPLAPMGESGGNGSGTGSVSGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSSCHSNEPAIRCERDTCGKIFATRSLRNDHIQHHSAQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSNHVKTKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDVDSYINNSHVHESINDSSRIVDHSIPDADLVCEMCSNLKFSDLETLCYHRRNIHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCLKTSASKEHLAAHIAKIHRYEPETKKEIRESLDFKSANVDDETPHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNKDVTSKLGIMTHNRVHHMNHPDLTCDYSNCKKLFRTRQDLESHRKDHKYHNMPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEEIHDHILSKPNTCKVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTRDEELRNHYASIHNVPKDQLSGLDYRLETSTGKPDDYESADLLIKEEPDDIDFDVDLCNEDSNERKRKRPLTDTFDCNLCHEIFLNDETLSQHCRNVHNMNPGKKFKKSEKVGAGVKKKFKNRETFECKNCGKQFSTKTLFWNHINVCERRNSVNKDSENCFPMSILEAHLKNNNQIKKEEPDPVLNESNLNIPDFNLFEDINMQLTGHKPVPDLMPISSAKRHSSNKCSRKDSRKVYDESTNTECACEVCGKPWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCQTYDDLANHLKAAHKAILTREGNNFTCKTCGRYHNARSKLLLHMSIHINYNGNEWCQNCHQGFDDGEKLKEHLVSCTIKQIDYDDHSNDADVRVKNENDNEDKRSLIDDDNSLMEEVEEVEFESEAEGDATEILDDSISDNSESEASNDSISDEEENEDENEVEEDDVDEENEIDDESRTHSRVTGDVTSDSHKDEDSDHPGEDLSVHSENDYIDKEINNVSFLSETDDTNVMENEDCQDARLQEQKNIVNTVESLGKEIVDANIDEDSQELEDNSQARNFNEKDFEDRPCELQNQALFKEELGDYLDDEGPPVLSPMVPLPVANDTDNPAMDQLDTVQHKLIPVVPSDPDKFAALCELEEIENQIERGKSSIITSNLVELDENMKESKDPNATVNILEEMLETDSENEKGGEKEFQDDNDEASEVEDKAFENEVVSENENAIMEVEEAEEEDGEEEDEEAEEEEEEEEAEEEEEEEEVEEEKEKEKEEEEAEEKEEKEEEKQEGGEGVEEEEEEEEEEEKEEEEEEEEEEEEEEEEEEEVEEGGEGGEEEEEEGEEEGEGGEEVEEEEEEEEEEEEEEDEEEEDEEKEKGEGEGGEEEGEEEEEAEEEAEEEEEVEEEEEEEEEKEEEEEEENNENGGEDGDGDGDKDGEEKEKNDEEERKDEDDDDDDDDDKDENEDKDKDEDEDEDEDDDEDEDEDEEKGKEEEEDEDKDEDEDEEEQNEEEDEEEESGNGGEEVEEAEEENVHPDEDTLETCEEDQEDDNFEGIENAIDITDQIFARNSDGEIEDIETGDNTNTVQIPNLDGTVLMVANDADGNQILIQRNVSDLPNEDSNPEVTEYILEGENEYGIDNYEVASNDEDVTQQSDNSSEISKEENNVEAMEDKHISIISAKSKVSRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -