Pate020006.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- Snai1
- Assembly
- GCA_963170745.1
- Location
- OY720670.1:4804194-4807802[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.5 8.9e+02 1.1 0.1 3 16 65 78 63 80 0.74 2 13 0.0016 0.17 12.9 0.2 1 23 260 282 260 282 0.95 3 13 2.7e-05 0.0028 18.4 1.2 1 23 290 312 290 312 0.98 4 13 6e-06 0.00062 20.5 0.2 2 23 320 341 319 341 0.97 5 13 2e-06 0.00021 22.0 0.8 1 23 347 369 347 369 0.99 6 13 2.8e-05 0.0029 18.4 2.0 1 23 376 398 376 398 0.98 7 13 4.4e-06 0.00046 20.9 0.6 1 23 404 426 404 426 0.96 8 13 6.2e-06 0.00065 20.4 0.1 1 23 432 454 432 454 0.98 9 13 6.2e-07 6.5e-05 23.6 1.2 1 23 460 483 460 483 0.96 10 13 2.4e-06 0.00025 21.7 0.6 1 23 489 512 489 512 0.96 11 13 2.1e-06 0.00022 21.9 2.5 1 23 518 540 518 540 0.99 12 13 8e-05 0.0084 16.9 0.4 1 23 546 568 546 568 0.94 13 13 0.00033 0.034 15.0 0.2 1 23 574 598 574 598 0.94
Sequence Information
- Coding Sequence
- ATGACAGCCGACGGAGAAAAAGATTGTACTCACTGTTTAATATGCAACAGCAAAGTTGGTGTATCGACACGTAATAGCGTTAGAATATTTGGATCTCATTCCTCAAACGTGACTGAAAAACCTTTGATTGATATTATCTGTTCTGTTTTGGATGTTGAgttgaacgaagaaaatgtTCATTCACTTGTCATTTGCAAAAAATGCTATAAACTATTCAACGAGGTTGATGAGCTGGAAAATAGACTGGCGGAAATAAAAGTTGAATTATTTACAAACTATAAAAGAACGGCGAGGAAATTGTCCAATACTGTATAtcaagatgaagaagaatttAATGATCATGATTATACAGAAAATCCCGAAGCTCTGAATTCTGAATTGGCCGGATCTGCCAGAGTGggtcaaaaattgaaaaagaaaggtGTTAAcgcaaaaaaaacaaccaacGATGGAAGTGCGGAGAAGGACGAAGAAACATCAAAAGGTGAGAAAGAAGATGACGGTGACGATATCGAAATAAGAGAATTCCTAGACGAGCAGCcagagaaaataattgtaaaaattgaatcagacTTGAACAATGAAAGTTCGGAGGTTCGTAAGCCAAATACAAAAAAAGGGAAAGTTAATGTCAAGGCAGAATCTGTTCAAGAGCAGcttgTTACCAGAGACGGATCAGTTTACACATGTTTATTGTGTACAAACGAAGATGAAAGAGCAATCGGAGATGCCAAAGTAATAACAACACATTTAAAATCAGTTCACGATGCACGTTTATATATCTGCGATATATGCAGCATGGAATTTAGAAAGAGGAATGAACTTTCGGTTCACCTTGATGATCACGTTGCCAATGAGGAAGGGGACTTCCAATGTGAAGTCTGTAATAGAATATTCAGCAATTTAAGACTATTCAGAATTCATAAAAGGATTCATTATCCTCAGGCTAAATCCTGGCCGTGTGAAACTTGCGGCAAAAGATACAGTTCGAGGAATTTACTCGAAGAACACATAAATACACATACAGGAGTCCGTCCTTACGTATGTGAAACTTGCGGCAAAGATTTTGCATccaaatatacctacaaagCGCATGTTAAGACCCACGAAGTTAGACCGAGGCCTTTCGAGTGCAGTCAATGTAACAAGTCATTTCTAAGTCAGCAGAATTTGAATCAGCATGAAAGAACGCATAATGGGATAAAAGAATACGTGTGCCATCAATGCGGAAAGGCTTTCGGATCGCCTCATAATCTTGAAGTTCATAACATCGTTCATACAGGCTACAAACCTTACATATGTAGAATTTGCGGCAAAGCTTTTGCACGGAAAGCTGAAATAAGAGATCACGAGCGTACTCATACAGGGGAAAAACCGTATCAGTGTGAATTTTGTGGAGCAACATTTAGCCAAAGATCTAATCTTCAATCCCATAAGCGAGCTACTCATTACAACGATAAAAGATATAAATGCAACGATTGTGGAAAGGGATTTAAAAGACGAAGGCTTTTAGACTATCATATAAAGGCGGCTCATACTGGTGAAAGACCATTCAAATGCCCAACTTGTACAGCCACTTTCGTTTATCCGGAGCATTTTAAGAAACATATGCGCATCCATACTGGGGAGAAACCTTATTTGTGTGAAGTATGCGGTAAAGCTTTCAACAGTAGAGATAACAGAAACGCTCACCGATTTATACACAGTGATAAGAAACCTTATGAATGTTTGGTGTGTGGTATGGGATTCATGCGCAAACCTTTATTGTATACACACATGCAGACTCagGGCCATCTCAACGATACCATCGTTGTGAATCAGCCTCGTTTAACAACCGACGATGATCAAGTTATCGCTATACCAGACGGAGACGTTGAATTGTTAATGGAAGACGGAGAAAACGAACAGaCAACAGAATTGTATATAACTGAATTGAAAGATCATGTAATTATACAAGACGGAGATCAAATATACGAGGATGAAAATGTCTTGGGACTTCCATCGGATGATAATATTGTAGAAGAAGATGTTGATCACATGGTGGTCGATGGACagATGACCTTTACTGAAGGAGAGGAAGTTATGAGTGCAGGAGGATGTAAGTCGGAAGCTGGTGAAGAGGAACATATTGAAGAAGTTTATAGTTATAACGACAGCGAAGATGGTTCAGCCATAGTCGTACCAACCACTTCGCAATACGAAGAAATAGTTAGCGATGATCAAAATTCAGTTAGATTAGTACAGATTAGAATTCCAACTTCCGTAACAACCGACGACGGCAGAAATTGGTTGAATTTAGTacaaaatacatga
- Protein Sequence
- MTADGEKDCTHCLICNSKVGVSTRNSVRIFGSHSSNVTEKPLIDIICSVLDVELNEENVHSLVICKKCYKLFNEVDELENRLAEIKVELFTNYKRTARKLSNTVYQDEEEFNDHDYTENPEALNSELAGSARVGQKLKKKGVNAKKTTNDGSAEKDEETSKGEKEDDGDDIEIREFLDEQPEKIIVKIESDLNNESSEVRKPNTKKGKVNVKAESVQEQLVTRDGSVYTCLLCTNEDERAIGDAKVITTHLKSVHDARLYICDICSMEFRKRNELSVHLDDHVANEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQAKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCETCGKDFASKYTYKAHVKTHEVRPRPFECSQCNKSFLSQQNLNQHERTHNGIKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCNDCGKGFKRRRLLDYHIKAAHTGERPFKCPTCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTDDDQVIAIPDGDVELLMEDGENEQTTELYITELKDHVIIQDGDQIYEDENVLGLPSDDNIVEEDVDHMVVDGQMTFTEGEEVMSAGGCKSEAGEEEHIEEVYSYNDSEDGSAIVVPTTSQYEEIVSDDQNSVRLVQIRIPTSVTTDDGRNWLNLVQNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00175229;
- 90% Identity
- -
- 80% Identity
- -