Pate012485.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720663.1:4845857-4848989[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.003 0.31 12.0 6.9 4 23 109 136 106 136 0.81 2 14 2.8e-06 0.00029 21.5 1.8 1 23 146 168 146 168 0.97 3 14 1.3e-06 0.00013 22.6 0.4 1 23 174 196 174 196 0.98 4 14 0.92 96 4.2 0.6 2 12 203 213 202 215 0.88 5 14 0.00019 0.02 15.7 0.3 1 23 331 353 331 353 0.93 6 14 0.00064 0.066 14.1 3.4 1 23 359 381 359 381 0.99 7 14 1.7e-07 1.8e-05 25.4 0.8 1 23 387 409 387 409 0.98 8 14 0.0003 0.031 15.1 1.1 3 23 417 438 416 438 0.97 9 14 1.7e-06 0.00018 22.2 2.2 1 23 443 465 443 465 0.97 10 14 1.5e-05 0.0016 19.2 2.1 1 23 474 496 474 496 0.98 11 14 3e-06 0.00032 21.4 1.1 1 23 502 524 502 524 0.97 12 14 3.9e-05 0.004 17.9 1.3 2 23 531 552 530 552 0.97 13 14 2.6e-06 0.00027 21.6 3.3 1 23 558 580 558 580 0.98 14 14 1.9e-05 0.002 18.9 0.8 1 23 586 608 586 608 0.98
Sequence Information
- Coding Sequence
- ATGCACACCAGAGTGCTATTAAAAATACCGAAAGAAGAAGTGGAACATCAGAAGCCTGTTACCAAGCAACGAGGACCATGGGAAATAGATATAAAATTAGAAGACGGTGCTCATAAATCAATGACCAAAAAGATTGTTAAAGAAAAGGTGAattatttcgagaaaaatggaagagtCTTAGTTCTCGTTGACTCGACATTGGAGGATAGTAATGCTGATGTTTCAGCTATAAGAGTACGTGACAAGGATCCTCTCCATGTCGATAACGAGAAagaatttcttgaattattgGCATCACATCCTGTTGACGAAGAATGGAACTGCGATCATTGTGATAGAATATGTGGAAACAGAGATTTGTTACGGTTTCGAAATAAAAGTAATCTCAATAAACACATGAGAATTCATCAGCCCGATTACAAACCAGAAAGACCTCACCAGTGCGAGATGTGCGGTAAAATGTTTGCGACTAAAAAgtcattgaaaattcatagcAACATTCACACAGGGGAGAAAAGCTACTCTTGTGATCAGTGCGGGAAGACTGTAAGAACTCGTGCATCTCTCAGAGATCATATTCGACTTCATACTGGACAAAAACCCGTCGTTTGTCGTTATTGTAAAAAAGGATTCACCAAGAGATTAATCCTGAAAACAGGATATCCTGAAAGAAAAACTGCACAGACTTTCAATAGTAAGAATCACCAAGGACAAAGGGAGATAGAGGACACACATTTTACATCAAAAGTTGAAGAGACGATCTTTGAGAGAAAGATATCAATTAGATCGGATGTTGTACAGCTCACCAGCAATCATACggaaaatgtgaataaaagAAAGTGTGAAGATGATAGAGTGAAAATTTCTAACGATTTAGCATTGACTTgcgaagaatttgaaaactctAATCCAGCTTCTAGCTTTGAAACAATAGAAATTAACTGCAAGTACGAAACATCTGTGGACGACAATTGCCGAGGAACGAAATTCTACCAGTGTGAAATTTGTGCTAAAAGTTTTAGATCAAAGAATCTTTTTGAAGGACATTTAGTCGCTCATAGCGACGCCAGACCCTACAGATGCGATGTTTGTTGCAAATCATTTAAACGTACAAACACTTTGGCTGTCCACAGAAGAATTCATACAAGGGAACGTAATTTTGTGTGCGATGTGTGCGGTAGATCGTTTGTTCAAGCTTCTCAGCTAGCTACTCATCATAGAAGGCATTTCGAGAAGTATACAAAATTCTGTGATATTTGTAATAAAGGATTTTTCACGAATGCCGAGCTCCATGGTCACATGAATATTAAACATGAGGCTAAAGAACACGTGTGTAATAATTGTGGAAAATCTTTCCCCAACAATCACACTTTAGCTAGACACGCTAAAATTCATGAGCCGAATTTCAAGCCAGTTAAACATCAGTGTGAATTTTGTGGCAAGACTTTTGCATATAAAAATTCTCTCGTACTTCATGTCAAGTCTCATACTGGCGACAATAAATTCGACTGCCATCTTTGCGGTAAATCTGTTTCCTCCAAAGGATCGCTTCAGGATCATCTCAGACTCCACGGAGGAGAAAAGTCCCTGGTTTGTGATGTCTGTGGTAAAGCTTTCCACAAACGAACGACTCTTGTTGTTCACAAACGAACTCATACCGGTGAAAAACCATACAGTTGTGATACTTGTGGCAAATCTTTTACTCAACATTCTACCCTTGTTATTCATAAACGTTATCATACAGGCCAAAGACCTTATCAATGTAACTTTTGTACAAGGTCTTTTGTTTCTAGGGCTTTACTTAATGCACATAACAAAGTACATGTCGTTAGCGTTACTATTGTACAACCAGATTAA
- Protein Sequence
- MHTRVLLKIPKEEVEHQKPVTKQRGPWEIDIKLEDGAHKSMTKKIVKEKVNYFEKNGRVLVLVDSTLEDSNADVSAIRVRDKDPLHVDNEKEFLELLASHPVDEEWNCDHCDRICGNRDLLRFRNKSNLNKHMRIHQPDYKPERPHQCEMCGKMFATKKSLKIHSNIHTGEKSYSCDQCGKTVRTRASLRDHIRLHTGQKPVVCRYCKKGFTKRLILKTGYPERKTAQTFNSKNHQGQREIEDTHFTSKVEETIFERKISIRSDVVQLTSNHTENVNKRKCEDDRVKISNDLALTCEEFENSNPASSFETIEINCKYETSVDDNCRGTKFYQCEICAKSFRSKNLFEGHLVAHSDARPYRCDVCCKSFKRTNTLAVHRRIHTRERNFVCDVCGRSFVQASQLATHHRRHFEKYTKFCDICNKGFFTNAELHGHMNIKHEAKEHVCNNCGKSFPNNHTLARHAKIHEPNFKPVKHQCEFCGKTFAYKNSLVLHVKSHTGDNKFDCHLCGKSVSSKGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGEKPYSCDTCGKSFTQHSTLVIHKRYHTGQRPYQCNFCTRSFVSRALLNAHNKVHVVSVTIVQPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -