Basic Information

Insect: Phymatocera aterrima
Gene Symbol: -
Assembly: GCA_963170745.1
Location: OY720660.1:12702182-12711328[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.085 2.3e+02 2.3 0.1 15 29 146 160 136 178 0.71

2 14 0.0061 16 6.0 0.1 17 38 178 196 173 197 0.84

3 14 0.042 1.1e+02 3.3 0.2 18 39 207 225 205 232 0.76

4 14 4.8e-05 0.13 12.7 4.0 15 39 242 267 236 270 0.87

5 14 0.0048 13 6.3 1.1 17 40 271 291 268 294 0.87

6 14 0.012 33 5.0 0.9 15 29 296 310 288 319 0.79

7 14 0.00017 0.46 11.0 1.1 12 39 321 345 315 352 0.83

8 14 1.6 4.3e+03 -1.8 4.0 14 25 378 389 373 393 0.81

9 14 0.31 8.4e+02 0.5 5.0 17 40 410 430 397 433 0.82

10 14 0.00055 1.5 9.3 0.8 10 38 484 507 481 511 0.80

11 14 0.00082 2.2 8.8 0.7 16 40 525 546 516 551 0.75

12 14 0.0053 14 6.2 0.9 5 28 543 564 539 572 0.78

13 14 0.0023 6.3 7.3 0.9 19 37 583 598 579 604 0.76

14 14 0.00043 1.2 9.7 1.8 6 40 599 629 594 631 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.085	2.3e+02	2.3	0.1	15	29	146	160	136	178	0.71
2	14	0.0061	16	6.0	0.1	17	38	178	196	173	197	0.84
3	14	0.042	1.1e+02	3.3	0.2	18	39	207	225	205	232	0.76
4	14	4.8e-05	0.13	12.7	4.0	15	39	242	267	236	270	0.87
5	14	0.0048	13	6.3	1.1	17	40	271	291	268	294	0.87
6	14	0.012	33	5.0	0.9	15	29	296	310	288	319	0.79
7	14	0.00017	0.46	11.0	1.1	12	39	321	345	315	352	0.83
8	14	1.6	4.3e+03	-1.8	4.0	14	25	378	389	373	393	0.81
9	14	0.31	8.4e+02	0.5	5.0	17	40	410	430	397	433	0.82
10	14	0.00055	1.5	9.3	0.8	10	38	484	507	481	511	0.80
11	14	0.00082	2.2	8.8	0.7	16	40	525	546	516	551	0.75
12	14	0.0053	14	6.2	0.9	5	28	543	564	539	572	0.78
13	14	0.0023	6.3	7.3	0.9	19	37	583	598	579	604	0.76
14	14	0.00043	1.2	9.7	1.8	6	40	599	629	594	631	0.82

Sequence Information

Coding Sequence: ATGCTTTCGCCGCGTTTACTACCTCCCGGCTACCTCCGTTCACCGCCACACCTCGACCTCATCAGAGGCTCATTGATGTCAAACGCGGAGAGCCACCAAACCGAAGCTTATAATGATATATTGTTCAATGAAGTCGATGGAATGAAACGTATCGTGGAAGAGCCTTTAGCCAAGGATGTCTCAACTTTGAGAGGATTTATAGATTATGTTGACACTATCTCAACGGAAGACATCAAAATCGAGATACAGGATTCGATGAAACTGGGGCTAGCTGTTTCCGTTCCATCGAAATTTACAGATCttaatttcacaaatttaaTGAAACAAGAGAGACTACGAAAATCATCAGCTCGATACAGGGCGCTGCCAGAAATGCAGGATCCCTGCAGCGAGGAAAGCGCTGATGTTAActggaaattgaatgatgcagaTCCAAGCCTTTATCGATGCGCTATTTGtcaggttcaattttcaagtcgaGTTTCCTTAGACAGACACATTGTAGACTTACATTTGGGTACGACAGGTCATTTCCAGTGCGATATTTGCCAAAAAGAGTTTTCTCGTGTCTCTGATTTAGCTCGACACAAATTGATACATACTGGAGTTGAACCGTTCCAATGTAACACTTGCCAAAAGCAATTCCCTAGACAAGATGATTTGAAACAGCATATCCTGAGCCATTCTCAATGTTCGGATAACGAGTTATTTGCTTTTGAAAATGGTTTGAACAGGTGTACTATTTGTCATAAACAATTATCACGAGCGCAACATCTGAGAACTCACATGAGACAACATTTGGGGACTTTATTCGAGTGTGATAAATGCAACAAGAGATTCTCTCGAGCTTCTCATCTCAGAGCTCACATGCGGCTTCATTTGGGTACATGTTTTCGATGCGATCTTTGCAACAAGGAATTTTCCAGGCCATCCGATTTGGAAAGACATAAGATAACGCATttagataaaaaattattcgaatgtCCTACttgtgaaaagaaattttccagAAAAGATAATCTCAAAAAGCACATGCTTTCTCACGTAGAATCGATTTCCACAGACCAAGATAATCGGCCTAAAATTTGCTTCGATGGAAATATCTCCGAGGACTGTATTTGCcttaattcaaaaaaaaattgtcagtGTAACATTTGTGTGGCGAAACATAATTCTTTGCCTTCGGTATTTCAAGGACACACGGTTGTTCACACGGATATAAAATGCCATGAATGTCACGTTTGCAAGAAATATTTTAATAGAAAAGATCATTTGAAAAGACATTTAGCTTCGCACACAATTTCAATTCCCTGTGATCAAACCGACACAGGTAAAAATACAAAAGACAATTCTTTTCAGTTTGGGGAAAAATCGAGCATCTACGACGTCTGTAGCGTAGAAATTGATAgcaaatttcgtttcaataaAGACATTGTGTGTTCACACGATTCTCCTGAAAAGAAGTTCGAATGTGCGATTTGTGAGAAACGATTTAACAGAAAAGTTCGATTAAAAAAacacgttcatgtacatggAGACGGTAATTTCGATCCTAACGATGGGAATGAGGTTGAAAATAGATGCAGTATTTGTCGAAAGCAATTATCACGCCCTGAACATCTGAAAGCACATATGCGACTCCATCTTGGAACGCTTTTCAAGTGTGAAATATGCCAAAAAGAATTCTCACGATTGTCTGATTTGGATAGACACAAGTTGGTGCATTCGGGAGTCAAACAATTCTTATGTATTATTTGCCATAGACAATTTTCCAGGAAAGATTATCTCAAGAATCACATGCTCTCCCATGCTAATCAAAAATCGTTTGAATGCGATAAATGTAAAAAACGATTCacatatttcacaaatttgagAAATCACTTGCAGCTTCATGCattagaaaataaattagaattccatgaataa
Protein Sequence: MLSPRLLPPGYLRSPPHLDLIRGSLMSNAESHQTEAYNDILFNEVDGMKRIVEEPLAKDVSTLRGFIDYVDTISTEDIKIEIQDSMKLGLAVSVPSKFTDLNFTNLMKQERLRKSSARYRALPEMQDPCSEESADVNWKLNDADPSLYRCAICQVQFSSRVSLDRHIVDLHLGTTGHFQCDICQKEFSRVSDLARHKLIHTGVEPFQCNTCQKQFPRQDDLKQHILSHSQCSDNELFAFENGLNRCTICHKQLSRAQHLRTHMRQHLGTLFECDKCNKRFSRASHLRAHMRLHLGTCFRCDLCNKEFSRPSDLERHKITHLDKKLFECPTCEKKFSRKDNLKKHMLSHVESISTDQDNRPKICFDGNISEDCICLNSKKNCQCNICVAKHNSLPSVFQGHTVVHTDIKCHECHVCKKYFNRKDHLKRHLASHTISIPCDQTDTGKNTKDNSFQFGEKSSIYDVCSVEIDSKFRFNKDIVCSHDSPEKKFECAICEKRFNRKVRLKKHVHVHGDGNFDPNDGNEVENRCSICRKQLSRPEHLKAHMRLHLGTLFKCEICQKEFSRLSDLDRHKLVHSGVKQFLCIICHRQFSRKDYLKNHMLSHANQKSFECDKCKKRFTYFTNLRNHLQLHALENKLEFHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01200363;
90% Identity: iTF_01200363;
80% Identity: iTF_01200363;