Pate021032.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720672.1:1907555-1908100[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-07 0.00036 20.6 0.0 8 41 4 37 1 40 0.90 2 2 0.54 6.3e+02 0.6 0.0 16 28 126 138 123 138 0.85
Sequence Information
- Coding Sequence
- ATGAGAGGGGCAATTGCGGCGCATACAAACGGAGACTGCGGGCTCACTGAGGCGTGTAGAAGACATGACGTCCCAAAACCAACGTTCAAGCGTCATGTTGACGAGAAAAATGCATTTGCAAACAACGACATCGAGTTCGCTGGTCGACCACGGATCTTCTCCAATCATGTCGAGGAGGAACTAGAAAACCACATTTTACCTTTGCATACACAGATGTTTGGTTTGACCATCACAGAAGTCAGAAAATCGGCGTTTCAGATTGCCGAAAGCAATGGCATGCCGCATACGTTCAACCGGCCGAAGGGAATGGCTGGAAAAGAGTGGTACTACAAGTTTATGGCTCGACATCCGAATTTAAGTTTACGACAGCCTGAGAACACGTCGATGGCTAGAGCGAATGAATACTTCgatattctggaaaaaatatgtgatGTGATGAACATTATCTCGATGCTACGAGAATCTTCAACGTCGACGAATCTGCATTTTCCGCTGTGCACAAAAGAGCCGAAAAGATCGTCGCGCGAAAAGGATGCGAACGAGTAG
- Protein Sequence
- MRGAIAAHTNGDCGLTEACRRHDVPKPTFKRHVDEKNAFANNDIEFAGRPRIFSNHVEEELENHILPLHTQMFGLTITEVRKSAFQIAESNGMPHTFNRPKGMAGKEWYYKFMARHPNLSLRQPENTSMARANEYFDILEKICDVMNIISMLRESSTSTNLHFPLCTKEPKRSSREKDANE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -