Pate009712.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- lov
- Assembly
- GCA_963170745.1
- Location
- OY720661.1:9725530-9728022[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-18 4.3e-15 55.6 0.0 1 44 514 557 514 558 0.96
Sequence Information
- Coding Sequence
- ATGTCCAGCGCCGCGGAGAGTCCTGACGAGATGGCCCTTCAGTCCCACTATTCGTTAAGGTGGAACAACCATCAGGCGCACATCCTGCAAGCATTCGAGGCTCTTCTTCACGCAGAAACACTCGTGGACGTTACTTTGGTCTGCGCGGAGACCAGCCTCAGGGCCCACAAGGTCGTCCTCAGCGCCTGCAGCCCGTTTTTTGAGCGGATGTTCGCAGAGCACCCTTGCAAGCACCCGGTAATCGTGCTGAAGGATTTTCCTGGTCGAGAAGTAGCCGCACTCGTGGATTTCATGTATCGTGGCGAGGTCCGCGTCGGTCGTGAGGAACTTCCCGGGCTAATGCGAGCCGCAGAAAGTCTTCAGGTCCGAGGTCTAGCGTCGTCGGAACCACGACCAGCAAGTCCGCCGGAAACTCCAACGACGGATCTTCTCCTTGGCGAACCGTCGACGCCGGAAGGAGCCCAAGGTACACCAGAAGATGACGATAACGCATCAGAAAGTCCGGCACCAACGAGAGACCTCTATCACCACACCGATCATCTCCGGGACCATCGAGAAAACCGATTACCACACATGGGCCACCTGAGCTTTTCTTTACGTGAGTTAAGAGACTCGTGTGGCTCACCGCTTATGCCGAGGAGAAAACAGGCCAGGCCGAGAAGAAGATCGGGTGAACTTGTTCCCCAAGGATTAAGCCGGCCTCATCCAAATCCCACACCAAGTCCCCCGCCGTCAAGCGGTCTGAATCTGAGTAATCAACATCAACCTTTGAACCTGCAGCAGAatcaacagcaacagcaacagcagcaacaacaacaacagcaccagcaccagcaccagcaccagcaccagcaacATCAACAACAACACCATCACCAGGAAGATATGGCAGAAAATTTATCGATGAAGAGGTCGACGTCGCCAGCCCCTGGCGAACATACTATAAAAACTGAAAGCGAGGCGGCGAGTAGTCCGCGCGGGTCACCTCTAACCGGTACGAGTCTCCACCCCGATGGATCTCTGCAGGATTTTCCTGCCGGCGGCTTACCCGGTATGTCAGCACTGTCGCTGACTCCACCACATCATCACAGCGAGTACCTGACGAGCTTGGGCCAATTGGCAGCTCAATGGCTGCCTAGTCATCCACAAAATCAGCTTCCCCATCATCAACGAGAAGGAAGTCCTCACAGTAGATCTCACCCTTATCAACAACAGGAATCACCTTTAACGCCGAGACGATCCGTCGCTATTTTTCCCATGGATGGTGTAGGTCCTCTCGGTGGGGGCGGGGGGCTTTTTCCTCCCGGAAGTGGTCTCGACAGGGGTTCATTACTCGCGGATTTACACGACAGCTTTAAACCGGAAACACTCCACGGTCTTTTCGGTGGCGCAAGCCTCGGTCACCATCCGGTAAAGAAGTCGAAGAAGCATCGAGGCGACGGTGAGGGACCTAGGAGATGGAGTGATCACGGTCGACTGCCTGTTGGCCGACCGAAAGGTCAGCACAGTGCGCCTCGAGGTGGACCACCGCGATCCTGGACGAACGCCGAGCTCACGGAGGCCCTCCAGCACGTGTGGAATAAGAAAATGACCACGTCTCAAGCGAGCAGGATATTCGGTATACCGTACAATAGTCTGTTGATGTACGTGAGAGGTAAATATGGAAAGAGTTTGAAGCTTGAGCAGCTCCGGAGGGATTGTACGGGCGCGACAACAGGAGAGGTTATGAACTCTTTGAACAATAACGTAAAGACGCAGCCACCGTCACAAATGCCACATTCGTTGACGGGGATGCCACACCCCGGGGACGAGGCGACATTCTCGCATCCGTTACTTGGGGCGAATCTTCCGCAAGGTTTTTTCCCGGATTTTGGTGCTGCGTTTCCGGTACCCGTTAGTATGGTGCACCTTTTACCACCCAGTGAACAAAAGGCTTACGAACCAACACCGAGCTCTGGTGGTGGTGGTGCTACGAATGACGTTAATCCTAGAAGCCGGAGCCCCTCGCCAGTTCCACATGACAATTTAGTACAATCTACGCAACCGGCTACTGCTCTACTACAGCAAAATGGATCCGACTAG
- Protein Sequence
- MSSAAESPDEMALQSHYSLRWNNHQAHILQAFEALLHAETLVDVTLVCAETSLRAHKVVLSACSPFFERMFAEHPCKHPVIVLKDFPGREVAALVDFMYRGEVRVGREELPGLMRAAESLQVRGLASSEPRPASPPETPTTDLLLGEPSTPEGAQGTPEDDDNASESPAPTRDLYHHTDHLRDHRENRLPHMGHLSFSLRELRDSCGSPLMPRRKQARPRRRSGELVPQGLSRPHPNPTPSPPPSSGLNLSNQHQPLNLQQNQQQQQQQQQQQQHQHQHQHQHQQHQQQHHHQEDMAENLSMKRSTSPAPGEHTIKTESEAASSPRGSPLTGTSLHPDGSLQDFPAGGLPGMSALSLTPPHHHSEYLTSLGQLAAQWLPSHPQNQLPHHQREGSPHSRSHPYQQQESPLTPRRSVAIFPMDGVGPLGGGGGLFPPGSGLDRGSLLADLHDSFKPETLHGLFGGASLGHHPVKKSKKHRGDGEGPRRWSDHGRLPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRRDCTGATTGEVMNSLNNNVKTQPPSQMPHSLTGMPHPGDEATFSHPLLGANLPQGFFPDFGAAFPVPVSMVHLLPPSEQKAYEPTPSSGGGGATNDVNPRSRSPSPVPHDNLVQSTQPATALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01048153;
- 90% Identity
- iTF_01412468;
- 80% Identity
- iTF_01200327;