Basic Information

Insect: Phylloecus xanthostoma
Gene Symbol: salm
Assembly: GCA_030142555.1
Location: JARQTF010000259.1:752493-755199[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.19 13 6.5 0.4 2 20 202 220 201 221 0.93

2 7 9.8e-05 0.0066 16.8 1.5 1 23 523 545 523 545 0.97

3 7 0.0002 0.013 15.9 2.9 1 23 551 574 551 574 0.95

4 7 0.00011 0.0073 16.7 2.4 1 23 609 632 609 632 0.98

5 7 0.027 1.8 9.2 2.4 3 23 637 657 636 657 0.96

6 7 0.0007 0.048 14.1 0.2 2 20 768 786 768 787 0.96

7 7 0.091 6.1 7.5 2.2 2 19 795 812 794 815 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.19	13	6.5	0.4	2	20	202	220	201	221	0.93
2	7	9.8e-05	0.0066	16.8	1.5	1	23	523	545	523	545	0.97
3	7	0.0002	0.013	15.9	2.9	1	23	551	574	551	574	0.95
4	7	0.00011	0.0073	16.7	2.4	1	23	609	632	609	632	0.98
5	7	0.027	1.8	9.2	2.4	3	23	637	657	636	657	0.96
6	7	0.0007	0.048	14.1	0.2	2	20	768	786	768	787	0.96
7	7	0.091	6.1	7.5	2.2	2	19	795	812	794	815	0.92

Sequence Information

Coding Sequence: ATGGCCTATGCACCATTACCCAAACTTATACCAATAAGCAGCACCAAATTATGTCCAAAGGAATCGACAAAGACCTCGCTTTCAGAGATTTTACAATCAGATCCAGTAAAACGACTTTTCAACCAACCAAACATTGTCATCGAAACCATTCCTATAGGTGCCCCTGCAAGTTCGAGCACAGTATTAAACAagagtatttttataaataaaaaaaatggcacgaGGCATGATCTGCATGGAAAGAATCAGCCAGAAATATCTATACTACCTGTGAGGTATGTATCGGgagagaacaaagaagaaggtACACATCTTCCATCTAAGAAGGATGGAAAGTCTGAAATTACATTGCTGCCGATAAAgcgtgagagaaaaaagtgtgGCCATTATGAACCATGTGAAAATATAGTCTGTGATGTAGCTGTGCAACAGTATGTCGATCATAATGGAGTATCTCCGATGCTTGCTGTAAATATTGAACCCCATGAAATTAATGCACCAGTATCCAAGCATTGTAAAAATGCACGTTGCGATACCTTAAACATTGATCACAATCGTTGTCGAAGAGCACTCATAAAACTGTATCGCTGTGATACGTTGCAGACATGTGATATTTGTGGTATTAAAATGAAGACACGGAAAGCCTTTGTACGTCACAAAAAGTGTaacagaaaagaagaatataggCATAATGAGACGGATGGGGCACAGGTCCTAAAAGAGAGAATGCGTGAGAGAGAATTACAAATGATGGAAGCGACACGTACAAAAAGGAATGAGTACGTAGATCCGGACACAGAATATAATCGAGTAATGGAAGCTCTAAAGAAAAACGAGGAGTTAATTGTTATTCCAAAATCAGTACCACCTCAGCCACCAATCATCACCATAACGTCCATACCGAATTCACAGGCTAATCAGCAATACTCCAGCGTTAAAGATGTTTTTGAGAAACTATTACCAAGCATACCAATCGTATTTCCTCATCAGAGTATACTGCTAGGCAAAAGGACTAATACTGATTCAATTAACGGACCGGCTGCTAAGCAATCAAAGTTACaagattttcttaataatactCTAATAAGCCCACCGACATCAGGTTCCATGCCATCAAATCAGTACACCAAACGGGCTGGTTTAACTCAGAGCAACATCCTACGGCCAGTTACAATAAATGACTGGTTAGTTTCTCAGGCGCAAATTGTGAGCTCATCAACAATTCAACCTAAACCATTTTTCACTCCAATCCGAGTAGTGCCGATAACCAATTTAAAATCGCCACCATCCTTGCTCCATCAGACTCAAGGCATTCCTAAGTTCTGCATAATGGCGGACAATACATTAAAACCACCTGTACTAATAAAATCACAAAGTGTACAGTCAACAGCAGTGCCAATAGTACCCGACATCAGTATCAAGGTGAAGTCTGATAAAGATCAGTCTAGTAATGCAACAACAGTAGcgtcaacaacaacaataacgaCAACACCATCAAAGGCAGTACCTTTGATTTTTGCCAATGTACATCAGCGAAGAAGATCCGATGACAAAAGCGGAAAGTCATTTGTATGCACTTACTGTCCAAAACGTTTTAGTACGGACTGGTATTTCAAAATGCATCTGGCTAAACACAAAGGCGAGACACCTTTCAGTTGTAAAACTTGCAATCAACAATTCACAAATCGATATGACATGAAGAAGCACTTGCTTAACGATCACAAAAGCAAAGATGGCGAACAAACTTGTGGCATATGTGGACACATATCTCTTTGTTACTCTGCACTCGAGGTGCATATGAGAAGTCACACTGGTGAGAAACCATTTAAATGCAACGACTGTGAGAATTGCTACAGGGTGAGGGGcgacttgaaaattcatcaacGAAAGGTACACGGCTTTGCTGACTGTTCTCACTGCAATGAACAGTTCAAGAAAACAGAATTAAAAGAGCACTTAATCACGATGCACGACGTGACGGAAGAAGAAGCCGAGAAGGAGGTAAACGATGACGAATACCTAAACGGTAAGACTCCTGAAGACATGGAAGaacaaagtaaagaaaatgcGTCCAAACCTATAGAGGTAGAGTCtagcaaaaagaaattggaaaatagaGTAGATGAGAAACCTAAAGTAAAGATTGCACCTGCTGTGGAGAAAAGTTCTGGTCCAGTAGCAAAAAAATCTAATGGCgtgacgaagaagaaagagaatacaaaGCAAAATGGAAAGGCGAAAAAATCAGCAACGGAAACGGTaccgagaagaagaagcacgCGACGTGGTAACTCTGGAGCACAATGTAAAGTGTGCGAAAAACACTTTGTAAATGCAAACTTATTAAAAGCGCATCTGGCCGACAAACCCAAGAAGGTCTCAGAGTGCTTAGATTGCGGGAAGAAGTTTCATACACTTGGCGAACGCAACAGGCATTCTTGTGAGAAGATCAAGGCGACGACGTCGCCATGCCCTTCGGTCAAGGCGACGACAAACACATAG
Protein Sequence: MAYAPLPKLIPISSTKLCPKESTKTSLSEILQSDPVKRLFNQPNIVIETIPIGAPASSSTVLNKSIFINKKNGTRHDLHGKNQPEISILPVRYVSGENKEEGTHLPSKKDGKSEITLLPIKRERKKCGHYEPCENIVCDVAVQQYVDHNGVSPMLAVNIEPHEINAPVSKHCKNARCDTLNIDHNRCRRALIKLYRCDTLQTCDICGIKMKTRKAFVRHKKCNRKEEYRHNETDGAQVLKERMRERELQMMEATRTKRNEYVDPDTEYNRVMEALKKNEELIVIPKSVPPQPPIITITSIPNSQANQQYSSVKDVFEKLLPSIPIVFPHQSILLGKRTNTDSINGPAAKQSKLQDFLNNTLISPPTSGSMPSNQYTKRAGLTQSNILRPVTINDWLVSQAQIVSSSTIQPKPFFTPIRVVPITNLKSPPSLLHQTQGIPKFCIMADNTLKPPVLIKSQSVQSTAVPIVPDISIKVKSDKDQSSNATTVASTTTITTTPSKAVPLIFANVHQRRRSDDKSGKSFVCTYCPKRFSTDWYFKMHLAKHKGETPFSCKTCNQQFTNRYDMKKHLLNDHKSKDGEQTCGICGHISLCYSALEVHMRSHTGEKPFKCNDCENCYRVRGDLKIHQRKVHGFADCSHCNEQFKKTELKEHLITMHDVTEEEAEKEVNDDEYLNGKTPEDMEEQSKENASKPIEVESSKKKLENRVDEKPKVKIAPAVEKSSGPVAKKSNGVTKKKENTKQNGKAKKSATETVPRRRSTRRGNSGAQCKVCEKHFVNANLLKAHLADKPKKVSECLDCGKKFHTLGERNRHSCEKIKATTSPCPSVKATTNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00252392;
90% Identity: iTF_00297870;
80% Identity: -