Pxan005956.1
Basic Information
- Insect
- Phylloecus xanthostoma
- Gene Symbol
- -
- Assembly
- GCA_030142555.1
- Location
- JARQTF010000300.1:71474-72865[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00019 0.013 15.9 3.3 2 23 188 209 187 209 0.97 2 9 0.00025 0.017 15.6 0.8 1 23 211 234 211 234 0.96 3 9 0.0027 0.18 12.3 1.1 1 23 239 262 239 262 0.95 4 9 0.00019 0.013 16.0 2.2 1 23 268 291 268 291 0.95 5 9 0.0007 0.047 14.2 2.0 2 23 298 320 297 320 0.95 6 9 0.00098 0.066 13.7 1.2 1 23 325 347 325 347 0.96 7 9 0.00041 0.028 14.9 0.5 3 23 355 374 354 374 0.98 8 9 3.3e-06 0.00022 21.5 0.1 1 23 380 402 380 402 0.97 9 9 0.00032 0.021 15.2 0.4 1 23 408 430 408 430 0.97
Sequence Information
- Coding Sequence
- ATGAGTTTATTTCTCTTGGCTCCATTGATGTCTAACGTTTACCAAATTTTCtgttttagaaatttcatctcCGATCCGCTAAGCGTCTCGGGGACGAGGACGCACACGGACGAAAAGAAAGCGGTGGTCAGGATTGAGTGTACACCGGAGTACATGATTTGGCCAAAGAAGAAAGCCGTGGCAGCAGTGGCAGCGGAACAGCGGCTTCGAAGCTTTCCATGTCGTAATCAGGTGTACTCTGTAACGGGTCTCGATGTTCAAGGGGACGTAGTGGATAAGAATGCGGCGGATGGGAATGGGGGCgatgatgaaaacaaaaacgaaAACGAAGACGAAGGCCAAGGTGCCAATGAGGATGaaggtgatgatgatgatgatgacggcGATGgcgatgaagatgaagatgacgacgactatgacgatgatgataacgatgatgacgatgatgacgatgatggcCATCGAAATAAGATGGTAAAGAAAGAGATGAAGGAAAGGCATCAGGGAAGACGGAAGGCCGAGAAGCGTCAAGTGTCCCGAGTTACTCGCAGCAGCAGCGTCGAGTGTGATCACTGCAGAcgcaaattttttaagaagAGCAACTTGGCCGAACACCTCAAGCAGCACAGGTACAAGTGTTCGGAGTGCGCAAAAACCTTTAGTCTGAAGCGATACCTGAACGGACACGTCGAGAAGATCCACAGGCCACACGTCTTCGAGTGCAGCGTCTGTGAGTACAAGAGCAACAACAAAGGAACTCTGAAGAACCACTTCATTCGGTTGCACACGAGCAGCTTTAATTTTGCGTGCGACACGTGCGGCAAGCAGTTCAAAATTAAGAAGGCTCTTAATCACCATGTCAAGCAAAATCACAGCGGAAACCCGCCAATAGTATGCGACGTCTGCGGTCACTTCAGCAAGAACCTTCACGCCCTGAAGGCCCACATGAAGTATCGGCACTACAAGCCCGAATTCGAGTGCAGGATCTGTCATAGGGGTATGACCACCAAGGAGAACCTCGAGCAGCATCTCACCTGGCACGAAACTCGCGAAAAGGTTCTCTGTCCCACATGCGGTAAGAGGTTTCGCGGACGTGATCTAGATTCGCACATGAGAGTGCACACGGGTGTCAAGCCCTTCCCTTGTCCTGTCTGCGGCAAGTCTTTTAGGAGGCAGACGGCCCAGGAACAGCATGTCCTTATCCACACCGGCAAGAGGCCCTACGTCTGCGACATCTGCGGCCAGGCCTTTGCGCAGAAGCCCGGACTCATCTGTCATCGGAAGCGTCATCCTGGACCACTGCCACCGCTACCAGTCGTATCCATTAAGAATATCGTAACCGAATTTACCAGAGAGTTCGCCATGAAGAATCAGACGATAATCCTCGAGTAA
- Protein Sequence
- MSLFLLAPLMSNVYQIFCFRNFISDPLSVSGTRTHTDEKKAVVRIECTPEYMIWPKKKAVAAVAAEQRLRSFPCRNQVYSVTGLDVQGDVVDKNAADGNGGDDENKNENEDEGQGANEDEGDDDDDDGDGDEDEDDDDYDDDDNDDDDDDDDGHRNKMVKKEMKERHQGRRKAEKRQVSRVTRSSSVECDHCRRKFFKKSNLAEHLKQHRYKCSECAKTFSLKRYLNGHVEKIHRPHVFECSVCEYKSNNKGTLKNHFIRLHTSSFNFACDTCGKQFKIKKALNHHVKQNHSGNPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFECRICHRGMTTKENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTREFAMKNQTIILE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294727;
- 90% Identity
- iTF_00770608; iTF_01198904;
- 80% Identity
- iTF_00770608;