Pxan005961.1
Basic Information
- Insect
- Phylloecus xanthostoma
- Gene Symbol
- -
- Assembly
- GCA_030142555.1
- Location
- JARQTF010000300.1:82714-84732[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0047 0.32 11.6 0.7 1 23 131 153 131 153 0.96 2 13 1.1 73 4.1 2.6 1 23 192 215 192 215 0.96 3 13 0.0025 0.17 12.4 2.1 1 23 329 351 329 351 0.99 4 13 0.12 8.3 7.1 0.8 2 23 360 382 359 382 0.93 5 13 0.019 1.3 9.6 7.7 2 23 389 410 388 410 0.97 6 13 0.0014 0.092 13.2 2.5 1 23 419 442 419 442 0.98 7 13 0.11 7.6 7.2 2.0 1 23 458 481 458 481 0.94 8 13 1.8e-06 0.00012 22.3 1.4 1 23 487 510 487 510 0.96 9 13 0.017 1.1 9.8 0.8 3 23 517 538 515 538 0.94 10 13 0.0028 0.19 12.3 0.2 1 23 543 566 543 566 0.97 11 13 2.4e-08 1.6e-06 28.2 0.4 2 23 573 594 572 594 0.97 12 13 1.9e-06 0.00013 22.2 0.4 1 23 600 622 600 622 0.97 13 13 5.1e-07 3.4e-05 24.0 0.1 1 23 628 650 628 650 0.98
Sequence Information
- Coding Sequence
- ATGCAGGTGATAACGATAGCTCTCGTCTGTTGTAGAGGGCCGGGCCATGGAGCTGCTGGACGCGAAGGAAGAGGCAAGAGGAGACTGCTGAAATCCGATGCGCATGGCCGCTTCATCCTAGGAGAGAATTCGCTGCCGATGAGACTGTGCCAGCTGTCCGATTCTCATGGGAATCTCCGTTACTCGCTCGTTCCCGCATCGGACGACTCTTCGGGGAAGGACGGTAGCCAGCAGGAGCTCATTGCGTCGAGCAACATCAAAGTCGAGCTGGCTGAAGAGTTTGTCGAGCTGGGTGGGACGGCAGGAAAGTCCGAGCAAACGGACCTCGCGAGCGAGGAGAGTCGTTACTTGGGCTCCCTTGCTCATCTTTGCGAAGTGGCCATCGAGTGCTTCCCATGTGACACCTGCACCATGAAGTTTCCCGTGGAGAGTATGTTGCTCAGACACAAGTTTCGCCATAGGCCAAACTTTCGAAGAAGACGACGACAACTATTCGCGTGCAAGAAGCAATACCATTCGTCGCAAAATGTACGGGGCAGCTTTAGCGACGCTCGTTCGCCACACGAGCCCATCTACACGTGTCGCCTCTGCAACTTCCGCTGCGACAGGCGAGCCATTCTGAGCTCTCATCTCGCAACGAAGCATCCGTCCGCGCGGCTGGAGAAGGAAGAGTCGGCGGCTCCTCGTACCTGCTACGACTGGCAGTCGGAGGCCATGAAAACGTCCAGCAGACGGCAGAAGTCTGAGCGGGGGGTGGTCCTGGTACGGAGgaggaaggaagaggaagcgCGCCAAGTTCCGCAAGAGAAGATCCAGTGTTGTGGCGACAGTGTCAATGATAACGACAATGGCTATGGCATTGTCAACGATAGCGATCGCGATAACGATAAAGACAACGATGGGGACGACGTGCAGAGTCTACACGACGATAATACAGACGAAGAGAGCGAAAGTAAAGAAGGCCTGAGAGAGGAGGGAGGGAACTATCGATGCGACGCGTGCTCCTTCGAAAGCAGCCGAAAAGACAAATATCAGAGACACTTGAGGATGCACGAGCGACGCCATGAATCGATTCTCTCTTGCGGTCGCTGTGACTTCCGGTGCAAGAGTGCCGCCACTCTGGATGCGCACGTCGCCCGAAAGCACGACGCGAACGAGCAGTGCCAATGCAACATTTGCGACTTCAAGTGCGCGAAGAAGAGCACCTTGTACTCCCACAAGAGGCGGCATCGGATCCAGGACCTCGGAAACGTCTACTCGTGCAACGAGTGCGGCTTCAAGACCGAGAAAAAGACGAGCCTCTACTCGCACATTAAGCGGAAACACAAGTCGAGTCGTTCGGCGTCAGGCGCCGCCAAGGCACCCGAATTCTTCTTTTGCAACCAGTGCGAATACAAGAACAAGAACAAGTACGAACTGAAGGTTCACGTTGCGCGCAAGCACACCGACGACTTCAAATTTTCGTGCGATACATGCGGCAAGAAGTTCAAGGTGAAGGGCGATCTGACGAACCACATAAGGTTCACTCACAAGGAGCAGCCTGTGATCTGTGACGTTTGCGGCAAGACCTGCCTCAACAGTAACTCCTTGTACGTTCATCAGAAATTCGCCCACTACAAGGCCAAGTACGAGTGCGCCATCTGTAAGCGACGCATGGTGAGTCAGGAAAATCTGGACGAGCACATGCTGCGGCAACACGAGAAGCGGGAGAACGTGGTGTGCGAGGAGTGCGGCAAGACTTTCTCGCGGAACAGTCGGCTCAAGGTGCACATGAGGATTCACACTGGCGACAAGCCCTACGCCTGCACGATCTGCAGCAAGTCCTTCGCTCGGCGCACCGCCCTCAAGCAGCACCTCCTCATACACACGGGAGTGAGGCCTTATGTGTGCGACATTTGCGGCAAGGCCTTTACGCAAAAACCCGGACTCATCAGCCACCGGAAGTCTCATCCGGGATCTCATCCGCCGCTTCCGAGGGTTCTGATAGACCACATTCTCAATGACGTCATGAACAATTAA
- Protein Sequence
- MQVITIALVCCRGPGHGAAGREGRGKRRLLKSDAHGRFILGENSLPMRLCQLSDSHGNLRYSLVPASDDSSGKDGSQQELIASSNIKVELAEEFVELGGTAGKSEQTDLASEESRYLGSLAHLCEVAIECFPCDTCTMKFPVESMLLRHKFRHRPNFRRRRRQLFACKKQYHSSQNVRGSFSDARSPHEPIYTCRLCNFRCDRRAILSSHLATKHPSARLEKEESAAPRTCYDWQSEAMKTSSRRQKSERGVVLVRRRKEEEARQVPQEKIQCCGDSVNDNDNGYGIVNDSDRDNDKDNDGDDVQSLHDDNTDEESESKEGLREEGGNYRCDACSFESSRKDKYQRHLRMHERRHESILSCGRCDFRCKSAATLDAHVARKHDANEQCQCNICDFKCAKKSTLYSHKRRHRIQDLGNVYSCNECGFKTEKKTSLYSHIKRKHKSSRSASGAAKAPEFFFCNQCEYKNKNKYELKVHVARKHTDDFKFSCDTCGKKFKVKGDLTNHIRFTHKEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECAICKRRMVSQENLDEHMLRQHEKRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYACTICSKSFARRTALKQHLLIHTGVRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01198869;
- 90% Identity
- iTF_01198869;
- 80% Identity
- -