Basic Information

Insect: Phylloecus xanthostoma
Gene Symbol: Snai1
Assembly: GCA_030142555.1
Location: JARQTF010000070.1:40990-44005[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.7 4.5e+02 1.6 0.0 1 23 219 245 219 245 0.91

2 13 0.00014 0.0097 16.3 0.2 1 23 250 272 250 272 0.95

3 13 1.7e-05 0.0011 19.3 1.2 1 23 280 302 280 302 0.98

4 13 6.7e-06 0.00045 20.5 0.2 2 23 310 331 309 331 0.97

5 13 2.2e-06 0.00015 22.0 0.8 1 23 337 359 337 359 0.99

6 13 2.9e-05 0.002 18.5 2.2 1 23 366 388 366 388 0.98

7 13 8.8e-06 0.0006 20.1 0.6 1 23 394 416 394 416 0.95

8 13 1.3e-05 0.00091 19.5 0.2 1 23 422 444 422 444 0.98

9 13 7e-07 4.7e-05 23.6 1.2 1 23 450 473 450 473 0.96

10 13 2.7e-06 0.00018 21.7 0.6 1 23 479 502 479 502 0.96

11 13 8.1e-06 0.00055 20.2 2.9 1 23 508 530 508 530 0.99

12 13 9e-05 0.0061 17.0 0.4 1 23 536 558 536 558 0.94

13 13 0.00028 0.019 15.4 0.1 1 23 564 588 564 588 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.7	4.5e+02	1.6	0.0	1	23	219	245	219	245	0.91
2	13	0.00014	0.0097	16.3	0.2	1	23	250	272	250	272	0.95
3	13	1.7e-05	0.0011	19.3	1.2	1	23	280	302	280	302	0.98
4	13	6.7e-06	0.00045	20.5	0.2	2	23	310	331	309	331	0.97
5	13	2.2e-06	0.00015	22.0	0.8	1	23	337	359	337	359	0.99
6	13	2.9e-05	0.002	18.5	2.2	1	23	366	388	366	388	0.98
7	13	8.8e-06	0.0006	20.1	0.6	1	23	394	416	394	416	0.95
8	13	1.3e-05	0.00091	19.5	0.2	1	23	422	444	422	444	0.98
9	13	7e-07	4.7e-05	23.6	1.2	1	23	450	473	450	473	0.96
10	13	2.7e-06	0.00018	21.7	0.6	1	23	479	502	479	502	0.96
11	13	8.1e-06	0.00055	20.2	2.9	1	23	508	530	508	530	0.99
12	13	9e-05	0.0061	17.0	0.4	1	23	536	558	536	558	0.94
13	13	0.00028	0.019	15.4	0.1	1	23	564	588	564	588	0.94

Sequence Information

Coding Sequence: ATGACAGCTGATTCTGACAAAGATTGTACACACTGCTTGATATGCAACAGTAAAGTTGGCGTCTCTACTAGGAACAGTGTTAGAATTTTTAGTGGGAATTCAGTGACAGCATCAGAGAAGCCTCTTGTGGATACGATATGTTCTGTTTTGGAATTGGAGTTAACTGAACAGAATACGCACTCTCTagttatttgtaaaaaatgctacaaattatttaatgagGTGGATGAATTAGAGACTAGATTGTCAGAAATAAGGCTTGAAATATTCACTAATTATAAAAGAACTATAGCAAAAATTTCTGGTGTTCCTCAAGGTGATGACGAATTTAATGATCATGATTATGTTGATAACTCTGAACTGCAGAATGCCGATGACCCTACTGTAAAGTTTAGTCAGAAACTAAAGAAGAAGATTCTTGAAATTAAAACCTCATTGAGTCCCCAGAATGTTTTGCTGGAGGGAAAAGATCACGAAGAACAAGAGGAAGAGGTAGTAGAGCAAGTCGAAGAACCGGAGCAAATCGTTATAAAAGTCGAAGCATTATTAGATCAGAAAGATCCTGATGATAAACCGGATTTtcgaaagaacaaaattaacattaagCAAGACGACATGCAAGATcagCAATTGGTTTTAAGAAATGACAACGAGTATACTTGTCTCTTATGCccggacgaagaaaaagtcaCTGGAGATGCAAAGACGATAATTAGCCATCTGAAAACAATTCATGATGCTCGCCTTTATATTTGTGACATTTGCGGAATGGTCTTTCGCAAACGGAACAAACTCTCTGTTCACCTGGATGATCACGTAGCTAAGGAGGAAGGTGATTTCCAGTGCGAGATATGTAATAGGATATTTAGTAATTTACGACTCTTTAGAATTCACAAGCGTATCCACTATCCACAAGCCAAATCCTGGCCCTGCGAGACGTGTGGCAAAAGATAcagcTCGCGAAATTTATTGGAGGAACATATTAATACGCATACTGGGGTGCGACCGTACGTGTGTGAAACATGCGGTAAAGATTTCGCATCAAAGTACACGTACAAGGCGCACGTAAAGACGCATGAAATTCGGCCAAGACCCTTTGAATGTACTCAATGCAATAAGTCATTTTTGAGTCAACAAAATCTTAACCAGCACGAAAGGACGCATAATGGCGTTAAGGAATATATATGTCATCAATGTGGCAAAGCATTTGGCTCGCCCCATAATTTGGAAGTGCATAATATTGTGCACACTGGCTATAAACCCTACATATGCAGAATGTGCGGAAAGGCTTTCGCGAGAAAAGCCGAGATAAGAGATCACGAAAGAACTCATACTGGCGAAAAACCGTACCAATGTGAATTTTGTGGAGCGACGTTTAGCCAAAGATCGAATTTGCAATCGCACAAACGAGCAACACACTATAATGACAAAAGATACAAGTGCAATGATTGCGGAAAAGGTTTCAAAAGACGTAGACTTCTGGATTATCATATAAAGGCTGCACACACTGGTGAAAGACCCTTTAAATGTGAAACGTGTACTGCTACTTTTGTATATCCGgaacattttaaaaaacacATGAGAATCCACACAGGAGAGAAACCATACCTCTGCGAggTCTGCGGTAAAGCTTTCAATAGTAGAGATAACAGAAATGCTCATCGTTTTATACACAGTGACAAAAAGCCGTATGAATGTTTAGTTTGCGGTATGGGATTCATGAGAAAACCACTATTGTATGCACATATGCAAACGCAGGGCCACTTGAACGATACTATCGTCGTTAATCAACCCAGATTAACTACAGAGGATGATCAGTTGATAGCCATTCCTGATGAAGATGTAGAACTTTTAATGGAGGGTACGGATAACGAGCAGGTCGAAGAAACCGAACTTTATATAGCGGAATTGAAGGATCATGTTATCATTCAACAGGGCGAGGAACAGATGTATCATGAAGAAAATGTTCTAAGTATTCCTGCCGAAGAGGCAATCGGTGAAGATGGCGTAGAGCATCTCGTTGTAGATGGTCAGattaattttacTGAAACGGAAGTAATGGAATGTAAAACCGAAGGTTCCGAACAGGTTGAAGAAGTTTACGGGTACAATGACAGCGAAGATGGGGAAACGATAGTTGTGCCAGCATCCTCAGAATACAAGGAAATGGTTGCAGATTCCAAAGGTGCAGTTCGTTTAGTTCAAATAAGGATCCCCTCATCGTCGAATGGAGAAGGTCGCAGTTGGTTGAACATAGTACAAAATACATAA
Protein Sequence: MTADSDKDCTHCLICNSKVGVSTRNSVRIFSGNSVTASEKPLVDTICSVLELELTEQNTHSLVICKKCYKLFNEVDELETRLSEIRLEIFTNYKRTIAKISGVPQGDDEFNDHDYVDNSELQNADDPTVKFSQKLKKKILEIKTSLSPQNVLLEGKDHEEQEEEVVEQVEEPEQIVIKVEALLDQKDPDDKPDFRKNKINIKQDDMQDQQLVLRNDNEYTCLLCPDEEKVTGDAKTIISHLKTIHDARLYICDICGMVFRKRNKLSVHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQAKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCETCGKDFASKYTYKAHVKTHEIRPRPFECTQCNKSFLSQQNLNQHERTHNGVKEYICHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCNDCGKGFKRRRLLDYHIKAAHTGERPFKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQLIAIPDEDVELLMEGTDNEQVEETELYIAELKDHVIIQQGEEQMYHEENVLSIPAEEAIGEDGVEHLVVDGQINFTETEVMECKTEGSEQVEEVYGYNDSEDGETIVVPASSEYKEMVADSKGAVRLVQIRIPSSSNGEGRSWLNIVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00770536;
90% Identity: iTF_01395281;
80% Identity: -