Pxan005005.1
Basic Information
- Insect
- Phylloecus xanthostoma
- Gene Symbol
- SCAND3
- Assembly
- GCA_030142555.1
- Location
- JARQTF010000273.1:1820648-1823503[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00025 0.017 15.6 3.3 1 23 360 382 360 382 0.98 2 15 0.00019 0.013 15.9 1.0 3 23 390 411 388 411 0.93 3 15 1.5e-05 0.00098 19.4 1.2 2 23 509 530 508 530 0.97 4 15 1.3e-05 0.00085 19.6 2.3 1 23 536 558 536 558 0.98 5 15 0.00015 0.0099 16.3 0.3 1 23 564 586 564 586 0.98 6 15 4.3e-06 0.00029 21.1 1.3 1 23 602 624 602 624 0.98 7 15 8.6e-06 0.00058 20.2 1.2 3 23 632 652 630 652 0.98 8 15 7.8e-06 0.00053 20.3 1.9 1 23 658 680 658 680 0.98 9 15 0.0039 0.27 11.8 0.3 1 23 686 708 686 708 0.99 10 15 7.4e-06 0.0005 20.4 0.3 1 23 714 737 714 737 0.94 11 15 2.2e-05 0.0015 18.9 1.3 1 23 743 765 743 765 0.98 12 15 0.00048 0.032 14.7 4.7 1 23 771 793 771 793 0.98 13 15 7.2e-06 0.00049 20.4 0.2 1 23 799 822 799 822 0.96 14 15 1.9e-05 0.0013 19.1 0.8 1 23 828 850 828 850 0.95 15 15 4.2e-06 0.00029 21.1 4.5 1 23 856 878 856 878 0.99
Sequence Information
- Coding Sequence
- ATGGCAAATGATTGGATGACAGAAGAGATTTCAATGAAGAGTGTGCTAAGTGAAGTTATGAATGCCAGAACTAAGTCAGATTTTATATCTGTCAAACAAGAGATAGAACTACTCGATGAAAGTTTAAGTCCTGCGACACCTGGTATAAGAATAAATCTCGACCGCTGcatcgataaagaaaagaataatgaaattgatacaGTGGCATCTTCTTCGAAAGCACAGCCGTCTaatattttaccTTTGCGTAACGGAGAATGCAATAGAGATGGTTTACCTTCCATTCCTAACGAAAGGACTTCTGTATTACCAAGTGCGATAAATCAAAGTTCAGTGTGTAGAGGACAAATTGATGTAATGGAGATACAAGCCGAAGAAGAGgacaattacaaatatttgttcattTACGAAGATCAGTTctctaaatttattattctcaaagCCTTACGAACTAATACCGTCAAAGAAGTCGCATTGAAACTCTTTAACGTACTGACAATCATTGGGGCACCGCGAGTTTTACAGAGTGGAAATGGTCGTGAATTTACTGAACGTGTGGTGCGCGAATTGCGTTCGCTATGGAGAAACCTTACGATAGTGCATGGAAATGTGTCGAAATGTGACGAAAGTATAAGGAGAGATTACCAGAATCTCATAAAATCATggctaataaaaaatccatCGAAAGTTTGGTACGAAGGTCTTAAATTCATCCAGATGCTTGAAAATACAACTTTCCAAAGAAATGATGGTAAAATCCCATATGATTTACTATTTGGACGTAACGTtcacaaagaaaatgagaaagataTTCTTTCTAAAGAAGTTCTGAAGAAAATTTGGAGCGAAGAAGAATTGTACGAGCATCTCAAGGACAATGAAAGCATCTCTCTCGATATTGAATTTGGAGAAAGCCCAGTTAAATCACCAAGAAACAACAGCAGTACGAATGgttttaattttgtcaatgTGAAAAGTGAAATGTCACTTAGCACAAATCAAATAGAAGATTCGCAATCTGAGGAGGAAAGAAATATAGGTGATCGATTACAGACACAAGACACAGAGAAATATCTGTTCAAGTGTAAAATCTGTCAGAAACAATATATGAAGTTAGGCCATTTAAAGAATCATATAAAAGCACACGTGAAAGCAGGTCGACTTGATTGTAATATCTGCCACAAGACATTCCGTCTTCCAAGTTTATACGATAAGCATATGAGTGAAGTTCACGGTCAAGAGAAAATCTTCAGCGACGATGCTTTTAATTCTGCAAAGAGAATGGATGTGGATAGCATAGCTCCAGAAAGAACTGAAAATAAGAACGAGAAGTTAGAAGATACTGGAACGGAAGAGAATCCTTTAGAAATTAGCGAGCGTATAagtcctgaaaaaaaagatagcaTGCTCCTCTGTATCTCGAATAAAAGTCACAAAAAAAGCCTTAAACGCACAAGCGCCCTGGCCAGAAGAAAAGTTTCCAAAGAGAATCGTCTGACTAAATTGAATGGTGATCCATTGCTCGAGTGCACATACTGCCAACAAAAGTTTGACTTTCCCAGTGTCTTAAAAAGACATATGCGCTCTCATACAAACGAAAGACCTTACGTCTGTCAAGTCTGCAACAAGAGTTTCAAACAGTTAGGACATCTAAGTCAACATTCTCTGACACATACGGACTACAGGTCGTTCCAATGTGCAGTTTGCGGAGTGAAATTCGAATCTCTGGACAGCTTGAAGAATCATTCACAAAGTCACAAAGGAGAATCGGTTGTGTATCGTCCAAAGGAGATTTATCGTCTCTTCGAATGCGACAGCTGCAAGAAGGTCTTCACGACAAAGAGTGTCCTGGAACGTCACATCTTTACTCATACGCACGAGCGTCAGTTTGGCTGTAAAGTATGTGGAAAAAGATTCAAACAAGCAGGTCACGTTAAGTCCCACATGCTGATTCACACGGGAGAACGTAAATTCGAGTGTACAATCTGTTCGAAACGTTTTAGCCTATCGAATTCTCTCAAGAAACATATGTACGTGCACAATGGCGAAAAGCCTTATCAATGCGACGTATGTGGTGCCAGATTTCTTGAAAAACGATATCTCAATGGACACTTGATGACCCACACAAACGAGCGTCCATTCTCTTGCAAAATATGTGGCAAAAGGTATACCCTTGCAGATACCCTGAGACGTCATATAAGTGCAGCTCACGAGGATGGCAGAACCTACCAGTGCGAAATCTGTGCAAAAATGTTTAAGCAGCTAGCGCACTTGTCGGTTCACAAGAAAGTGCACAACGACGAGCGACCGTTTCAGTGTCACCTCTGCGAGAAGAATTTCAAGCACAAGAATGTTCTCAAGTCACACCTGGCGATACATGCTAATGTGAGACCATTCGAATGTGACGTTTGTAAAGCTACCTTTGTGAGAAAAACTAATTTGCAAACTCACATAGCTTCGGCTCATATGAACGAACGTCCTTATGCATGTAAGATATGCGATAAGCGTTTCAAGCAAATCAGCCATTTGAACGGTCACGTTGTGGTGCATAGTAATTCTATGCCATATCAGTGTGACTTTTGTGACCGTCGGTGTAACAGACTAGACAACCTGAAGAAGCATATGCGTCTGCATACTAAGAATAAGGAGTAA
- Protein Sequence
- MANDWMTEEISMKSVLSEVMNARTKSDFISVKQEIELLDESLSPATPGIRINLDRCIDKEKNNEIDTVASSSKAQPSNILPLRNGECNRDGLPSIPNERTSVLPSAINQSSVCRGQIDVMEIQAEEEDNYKYLFIYEDQFSKFIILKALRTNTVKEVALKLFNVLTIIGAPRVLQSGNGREFTERVVRELRSLWRNLTIVHGNVSKCDESIRRDYQNLIKSWLIKNPSKVWYEGLKFIQMLENTTFQRNDGKIPYDLLFGRNVHKENEKDILSKEVLKKIWSEEELYEHLKDNESISLDIEFGESPVKSPRNNSSTNGFNFVNVKSEMSLSTNQIEDSQSEEERNIGDRLQTQDTEKYLFKCKICQKQYMKLGHLKNHIKAHVKAGRLDCNICHKTFRLPSLYDKHMSEVHGQEKIFSDDAFNSAKRMDVDSIAPERTENKNEKLEDTGTEENPLEISERISPEKKDSMLLCISNKSHKKSLKRTSALARRKVSKENRLTKLNGDPLLECTYCQQKFDFPSVLKRHMRSHTNERPYVCQVCNKSFKQLGHLSQHSLTHTDYRSFQCAVCGVKFESLDSLKNHSQSHKGESVVYRPKEIYRLFECDSCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLIHTGERKFECTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRYLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACKICDKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00298497;
- 90% Identity
- iTF_00770531;
- 80% Identity
- -