Basic Information

Insect: Phylloecus linearis
Gene Symbol: -
Assembly: GCA_030142575.1
Location: JARQTE010000268.1:3063378-3066856[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 9.2 6.4e+02 1.2 0.1 2 10 186 194 185 198 0.83

2 9 0.023 1.6 9.3 1.9 1 23 309 331 309 331 0.97

3 9 0.093 6.5 7.4 1.9 3 23 344 365 344 365 0.96

4 9 3e-05 0.0021 18.4 0.7 3 23 406 426 406 426 0.99

5 9 0.00016 0.011 16.1 1.8 3 23 434 454 432 454 0.95

6 9 3e-06 0.00021 21.6 0.6 1 23 462 484 462 484 0.98

7 9 6.9e-06 0.00048 20.4 1.2 1 23 516 538 516 538 0.99

8 9 0.11 7.8 7.2 2.3 2 23 548 570 547 570 0.93

9 9 0.086 6 7.6 0.5 1 19 581 599 581 602 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	9.2	6.4e+02	1.2	0.1	2	10	186	194	185	198	0.83
2	9	0.023	1.6	9.3	1.9	1	23	309	331	309	331	0.97
3	9	0.093	6.5	7.4	1.9	3	23	344	365	344	365	0.96
4	9	3e-05	0.0021	18.4	0.7	3	23	406	426	406	426	0.99
5	9	0.00016	0.011	16.1	1.8	3	23	434	454	432	454	0.95
6	9	3e-06	0.00021	21.6	0.6	1	23	462	484	462	484	0.98
7	9	6.9e-06	0.00048	20.4	1.2	1	23	516	538	516	538	0.99
8	9	0.11	7.8	7.2	2.3	2	23	548	570	547	570	0.93
9	9	0.086	6	7.6	0.5	1	19	581	599	581	602	0.93

Sequence Information

Coding Sequence: atggtacGTGTTTTGGATTTCTGCACAACGTGCCGTCTTTGTGCAAAAGCATACAGCATTGAAAAACTAGTAAAGATTTTTAGCAGCCGAGGAAATTCTTTAAACCTCAAAGACAGTATTAATATGCACCTCCCTATAAAAGTGACAGAAAAAGATAATCTGCCTTTAAATGTCTGTATCATGTGCTTACGCCGAATAAATGCTACAAGCGAATTCTTTAATACTGTTATTTCGTCAGATAAATTactcaataaatttttaagaaagaaACAGAATAAGCATTCAGCTTCGGTTGATACTCATAAGGATACGGAGCATGGCATATCGAAGAAGGATGCAGGATCTAAtaaacaaaaggaaagaaatccAGTTTTGATTACAGTAGAAACATCTACTTCTACGAAGGAAGTTGACTCTCGAGTTATCATGAAATCAGCAAATGTGGATGCAGGTGACAATAGCAGTGTAATGCTGAAAGGAAGTAGCAATGTAATGATTGGCGTCGCAAACAACATAGTTGCGAATAATTCTGCAAAAATACCTTTAGAAGTTTTGCGATGTCCTGATTGCGAAGAAAGTGTCAAAATTTTCTCATTGGAGGAACGGCGACTGTTTTTTGCTTACTTAAAGCAACATTCGTGCAATAAAATgaacaattttgaaaacgtaacaaatgaatataaaaataaccaGATTGTTGAATCCTTTTCCGAGTACAAGGAGAGACATCAgacgaaaacaagaaaaaggaaagaaaaccaGGAAGTAGGAGAATTAGGAAAATCATCGACAAGGTCATGGCCAGACGGTGATCTTCCTGCCGATCCTGGACCAGATCCTGCACCGCAAGAGAACATCTTTGAGGACAATGTCAGACTGGATGATGACTTCCATTGGCCAATGCCAAAACGAAATCGTCGATTGCATCGttgTCCCTCTTGTGATTTTATCACAAAAAGTGCTGTGAGATTGAAATCTCATCAAAAACTACATCGAATGGATAAGAGACAAAACGTCTACTACACAGGTTGCCGACattgttataaacaatttgAAACAAGTGTCGAAGCAAGAAAGCATGAACGACTGGTACACGTTGCCAATGGTGCAAAAAATAGTTTGTGCGAATATTGTGGACTCATGAAACCACAAAAGACATTGCGAGATCATATCTTGAAGCAACACACAGTGGAGTCTGAGATAGAGATGCAAGGGTGTAACATCTGTGGGAAAATGTTTATCTCACCAACGAGCTTGTACTTACATAAAAAAACACATTCTATAGAGAGACAACATCTGTGTGATTTGTGTGGCAAGGCATTCAAACAACGTATGGCTATGCGTCGTCATTACATGTTGCACTTTCCACGCGCGCCGCCTAAATTCATATGTAACATATGCGACAAAAGAGTCACTACAAGAGGTTCCCTACGTCTGCATATGATGCGACACACTGGTGAAAAGCCTCAAAAATGTCCAGAATGTCACATGGCTATGCGTCACGGCCTAAAACATCACATGCGTTTGCATTCCGACGATGCGCCCTTTAAATGCGTCGTATGCGGTGCTGATTTCAAACGAAGAGATTACATACGACGCCATATGCGAAAGCATCTAAACGATACACAGAATCAACTATTGCACTGCTCCACTTGCAACTATGCATTCGATGATATTAAATCTTTCTTAATACATCATCGAGATGTGCATAACAACGAGATATTTACTCAGATCAAAACTTACGAGTGTAAAGATTGCACCGCGCAATTTATAGACTGTTCTCGGTATAGGGATCACGCGGAAATTTGTCGAAGTTTGCAAGAAAACGCacgagataaaatttattcagatATCGAGCAAACTTATATCCCTAATAGTTATTCCAAAACAGTTGGGGATTTGCAAAAGTCTTGCGGGAGAATCGCAATCGGTCCTTGCAATGACAGTACCTGCAACAACTGCATGAACAATACATGCATGAACTATGCTAATCGAAATTGCATAAGTTCTGTATGCactaacgataataatatggTAGACTCTTGCACGATTCCTATAAGTACATGCAGTAGCAGTGCATCTTTAGACGTAAACCTCGTAAACAGAAGTTGTACAAATTTAGTCTATTCTGGTACGAATAATATGTCTAATACTCGTATGTATTCACCTACTAAAATAATAGACCATGCAAAAAAGTCGAGTCCTCGTGTGATTCTCAATCAAAAACTTACTAGTAACTATGACTATAGATTTTATCAAAATCGAATTAAGTCGAGTcaagaatttcgaaagttgaaaaaaatcgaGGAGCctgttttacaaaataatggACCTATGACGATCGTCCTTTCCGAACAGATCACACATTTAGATCCTGGAACGGAGTACGCTTATCTGAACAtggcaaaacaaaatattcgtgGCAAGGATGTACTTTTGGACGTAGAGGAGGATATGATTACAAACGCTACTGGTCATGGATATGAAAATCACATAGAACATTTTTCGAGTAATTCGTCGCCTGACCAAATTCAGGGTCAGCTCTGTCTGCCATCCTCTAGTAGTAACAATACTTACGTAAGAGAGCCCATTTCTTGGAAACAATTGTAA
Protein Sequence: MVRVLDFCTTCRLCAKAYSIEKLVKIFSSRGNSLNLKDSINMHLPIKVTEKDNLPLNVCIMCLRRINATSEFFNTVISSDKLLNKFLRKKQNKHSASVDTHKDTEHGISKKDAGSNKQKERNPVLITVETSTSTKEVDSRVIMKSANVDAGDNSSVMLKGSSNVMIGVANNIVANNSAKIPLEVLRCPDCEESVKIFSLEERRLFFAYLKQHSCNKMNNFENVTNEYKNNQIVESFSEYKERHQTKTRKRKENQEVGELGKSSTRSWPDGDLPADPGPDPAPQENIFEDNVRLDDDFHWPMPKRNRRLHRCPSCDFITKSAVRLKSHQKLHRMDKRQNVYYTGCRHCYKQFETSVEARKHERLVHVANGAKNSLCEYCGLMKPQKTLRDHILKQHTVESEIEMQGCNICGKMFISPTSLYLHKKTHSIERQHLCDLCGKAFKQRMAMRRHYMLHFPRAPPKFICNICDKRVTTRGSLRLHMMRHTGEKPQKCPECHMAMRHGLKHHMRLHSDDAPFKCVVCGADFKRRDYIRRHMRKHLNDTQNQLLHCSTCNYAFDDIKSFLIHHRDVHNNEIFTQIKTYECKDCTAQFIDCSRYRDHAEICRSLQENARDKIYSDIEQTYIPNSYSKTVGDLQKSCGRIAIGPCNDSTCNNCMNNTCMNYANRNCISSVCTNDNNMVDSCTIPISTCSSSASLDVNLVNRSCTNLVYSGTNNMSNTRMYSPTKIIDHAKKSSPRVILNQKLTSNYDYRFYQNRIKSSQEFRKLKKIEEPVLQNNGPMTIVLSEQITHLDPGTEYAYLNMAKQNIRGKDVLLDVEEDMITNATGHGYENHIEHFSSNSSPDQIQGQLCLPSSSSNNTYVREPISWKQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00292536;
90% Identity: -
80% Identity: -