Plin003603.1
Basic Information
- Insect
- Phylloecus linearis
- Gene Symbol
- Naa25
- Assembly
- GCA_030142575.1
- Location
- JARQTE010000247.1:802683-814662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0038 0.27 11.8 0.6 2 23 622 643 621 643 0.96 2 9 0.0057 0.4 11.3 5.1 2 23 709 730 708 730 0.96 3 9 2.1e-05 0.0015 18.9 3.7 1 23 814 836 814 836 0.98 4 9 4.2e-07 2.9e-05 24.3 1.7 1 23 842 864 842 864 0.98 5 9 4.6e-06 0.00032 21.0 3.3 1 23 870 892 870 892 0.98 6 9 4.6 3.2e+02 2.1 0.2 12 23 901 912 900 912 0.93 7 9 2.7e-07 1.9e-05 24.9 3.4 1 23 918 940 918 940 0.97 8 9 0.00024 0.017 15.6 5.7 1 23 946 968 946 968 0.97 9 9 1.5e-06 0.00011 22.5 1.9 1 23 974 996 974 996 0.99
Sequence Information
- Coding Sequence
- ATGGCGTCTAAAGCCCATGTGGACAGCACGGTTAACGAACGTCGACTCCGCCCAATTTATGACTGGCTCGATAATGGAAACAATAAGAAGGCCCTACAAGAGGCGGATAAGGTGCTTAGAAAGCAGCCAGGTAATCAGTGTGCCAGGGTTCTCAAGGCTTTGGCTCTTCTTCGACTTGGTAAAGAAGATGAGTGTCAACTTATCATGGATAAAGTTCGTGCTGAGGTGCCCTGCGAGGACTCCACTCTACAGGCTATGAGCATTTGCTATAGAGAGATTCATCAGCCTGATAAAATCAGTGAAGTGTATGAAGCCGCAGCAAAGATTGATCCTACCAATGAAGAACTATTGACTCATCTCTTCATGTCGTATGTACGGCTTGGAGATTTTAAGAAACAACAGCAGACCGCTCTGGCCTTATACAAGCTAAAACTGAAGAATCCATATTACTTTTGGGCTGTTATGAGCATAGTAATGCAAGCTTTAAAAGCTGATGATAAGCTTGCTAAAGGAGTTATTCTTCCACTCGCCGAGAGAATGGTGTTGAAACTGGTGAACGATGGAAAAATGGAAGCAGAACAGGAGGTACAATTGTACTTGATGATCTTGGAGTTGCAaggaaaagatgaagaaattttggaagTACTCTCAGGACCTCTTGCTTCCCGCCTTTCCGCTGTACCTCAACGAAAAGCTACCCTACTCTTAGAATTACAACGTTACCCTGAGGCTTCGGCGGCTTTCAAAGAACTCATTAACGAAGATATCGACAACTGGGCCTATTATCAAGAATATTTGAAAGCTGCATTAAAGCATCAAACACCTAAAGAATGTCTGGactttttaaatgaaactgCAGCAAGTGTCAAGGGAACAAAAGCCAGAGCTCCCAATCTGGCAAGATTTGAACTATTAGTCCGGATACAGGACTCTGAAGAAGGACAAAAATTACTTGATCCTGTACAGTTAATGCGTCAGTACTTTGCAAAATTTGGTGAAAAGAGTTGTGTTGTTGGCGATTTAAAGTTGTATTTGAATCTCCTCACGTCTTCTAGCAAGCTGAATCTACTTCGACAGatTAATGAAGATGTAGGCATCAAGTCTGATGAATATCCAAAGACCATAGAGCAAATGCAGAGACACATTCATATGAAGCAACTGCAGCGCATTTGTGGATTACACCATAATCCCATTGCTGAcaggaaggaaagagaaagactaGCGAAGAGACTTCTTGACCTTTATGATAAAGGAAGTGCCCTGTGTCCTTTCGAAGATAGACTGCCTACTGATTTTTGTCCTGCCGACCCCTATGCTCTTCTGGCATCCCATCTGCTTCATCAGCTTTATTTTGAGACTAACGATGCATCGCATTTATATAGGGCAATGGAATTATTGGAACGGTGCTTATTGTCGAGTCCtgctaattttcatttgaaaattttattggtCCGAATATATCTTGAAGTGGGTCTAATTGGTGGAGCAGATCATGCGTTTACTTTATTGGATGCCAAACATATTCAACTTGATTCTTTAGGCTATTTACATACGCCTCTTCTCGCACCTCTTGGCCATTTATCACGAGCTTCTGCGACACTTGATCATGCTGCCAAATTCTTCGTAGCCAATTACAAAGATGTATGGCAAGGAGATGGATTACCTGAGAAAATGTGTGATCGCTGTGTAACTAGAGCTGAATCTGCACTTCTTTATCGTGAGCAATGTAGAGCTGCAGACCGAGCTCTACGTCAGGCTGCATTAAAGGTTTCAGGACTCACGTCGTACGCGACTGTATCAGGATGTAAACTCTATCAGCAAAATCAAGGCTTTGTACCACTTCATAATTCTCAAAAGACATTAAAGTGCCTAGAATGTGGAGCTGTCTTTATGAATTACCAGGAATTATGTGCACATAATCGACTTCACGTACCATCTATGCAAAATGGAACGCCAGTACAGCACATGCACATCGTCGAGTCTCAAAATTCCTACTTTAATCTTAGTCATCTAGGATCGCATCTAGAAAGTGATTCTATGCAAGATTCATCTCCAGCTGGAGCATCGACTTTGTCCAATGGAATGGCAGAAAACGAAGGTGCTAGCAGGGCTGCTTGCGCATTGCACTGTTCCTTGTGCAATCATACTTTCACAAATAGAACTCAACTTATAAGTCACAATCTGACGCACGGTGCTGAGAATAACATTGATCTGTCCTGTGACAATGAAAATCCAGAAATTTGTGAAGATTCCAATCAGATCCAAAACCTATCCTATCCCAGAACATCTGTTCCGGAGAATCTCAGCTTCTCTGAGAACATAGCTCTGGTTCAAGAAGTACAGAACTCCGGAGATGACATTGAAAGAAGTCAAGATCGTCGGCTGACAGAGGGTAGCTACGAGGAAGAATTACCCAAGGATGACAATCGTAATAAAAAGCATAAATGTGATCTATGCGAAAAGACATTTGCCCAAAAATCGAAACTTACTACGCACAGGCTATCGCACACTGGTCAACGTCCTTTTAAGTGTACGAATTGTGACAAAGCTTACACAAccaaaagtaaattaaatgcTCACTTACGAttacatacaaaaataaatattcatcaatGTAACGTGTGCGATAAAACGTTCTCCTATCGCTCTTACTTGGAAGATCATAAGAAGATTCATAAATCAAAATCAGAAGTTATGCAACGAAAAGGCAATCTTGTGGAACATCTCAGGATTCACACTAGGATTAAACCGTTCAAGTGTGAAATATGTGATAAGTCATTCTCGCAAAGTTCTCATCTAAAGAGTCATCGGGTTTCACACGATTCCGAACGTCTTCATCAGTGCAGACTCTGTGGCAAAAGATTCAAGCTAGACAGCCATCTTAAACGGCATTTACAGTTACATACTGGAAGCAAAACGTACAAATGTAACGAGTGCAATCAAATGTTTGCTCAGGCTTTTAGTTTGAAAAGACACTTGAAGAGGCATACTGACTCTCGTATCTGA
- Protein Sequence
- MASKAHVDSTVNERRLRPIYDWLDNGNNKKALQEADKVLRKQPGNQCARVLKALALLRLGKEDECQLIMDKVRAEVPCEDSTLQAMSICYREIHQPDKISEVYEAAAKIDPTNEELLTHLFMSYVRLGDFKKQQQTALALYKLKLKNPYYFWAVMSIVMQALKADDKLAKGVILPLAERMVLKLVNDGKMEAEQEVQLYLMILELQGKDEEILEVLSGPLASRLSAVPQRKATLLLELQRYPEASAAFKELINEDIDNWAYYQEYLKAALKHQTPKECLDFLNETAASVKGTKARAPNLARFELLVRIQDSEEGQKLLDPVQLMRQYFAKFGEKSCVVGDLKLYLNLLTSSSKLNLLRQINEDVGIKSDEYPKTIEQMQRHIHMKQLQRICGLHHNPIADRKERERLAKRLLDLYDKGSALCPFEDRLPTDFCPADPYALLASHLLHQLYFETNDASHLYRAMELLERCLLSSPANFHLKILLVRIYLEVGLIGGADHAFTLLDAKHIQLDSLGYLHTPLLAPLGHLSRASATLDHAAKFFVANYKDVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAALKVSGLTSYATVSGCKLYQQNQGFVPLHNSQKTLKCLECGAVFMNYQELCAHNRLHVPSMQNGTPVQHMHIVESQNSYFNLSHLGSHLESDSMQDSSPAGASTLSNGMAENEGASRAACALHCSLCNHTFTNRTQLISHNLTHGAENNIDLSCDNENPEICEDSNQIQNLSYPRTSVPENLSFSENIALVQEVQNSGDDIERSQDRRLTEGSYEEELPKDDNRNKKHKCDLCEKTFAQKSKLTTHRLSHTGQRPFKCTNCDKAYTTKSKLNAHLRLHTKINIHQCNVCDKTFSYRSYLEDHKKIHKSKSEVMQRKGNLVEHLRIHTRIKPFKCEICDKSFSQSSHLKSHRVSHDSERLHQCRLCGKRFKLDSHLKRHLQLHTGSKTYKCNECNQMFAQAFSLKRHLKRHTDSRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -