Plin006129.1
Basic Information
- Insect
- Phylloecus linearis
- Gene Symbol
- -
- Assembly
- GCA_030142575.1
- Location
- JARQTE010000301.1:105217-106725[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.8e-05 0.0027 18.1 1.5 2 23 167 188 166 188 0.96 2 10 3e-07 2.1e-05 24.7 2.5 1 23 194 216 194 216 0.98 3 10 2.4e-05 0.0016 18.8 0.1 1 23 222 244 222 244 0.98 4 10 0.3 21 5.8 5.8 3 23 252 273 251 273 0.93 5 10 4.8e-06 0.00034 20.9 1.4 1 23 278 300 278 300 0.96 6 10 9.7e-07 6.8e-05 23.1 0.7 1 23 310 332 310 332 0.98 7 10 3e-05 0.0021 18.4 1.6 1 23 338 360 338 360 0.98 8 10 4.6e-06 0.00032 21.0 0.5 2 23 367 388 366 388 0.97 9 10 1.3e-05 0.00093 19.5 1.3 1 23 394 416 394 416 0.99 10 10 5.9e-05 0.0042 17.5 0.1 1 21 422 442 422 443 0.95
Sequence Information
- Coding Sequence
- ATGAGgttaATCAATGGCAAGAAGTCTTCGAATCCGTTGGACCAAAGGAATGGAACACTACTTTTGGAAAGTTCTTCGGTTCCAGAGACTCGGGTAGGTGAGCCAGGGCAGGAGCAGGGCAGCCAGGGCTGCTTCTCTGTTCTCGCTTGCGCTAAAGATTCGGATGCGGAAACACATGCCGACAAGCATGCGTGCCGCGCTGCAGAGGACGAGACTCCAGCAGCATCTCGTAACTCGAGCGAATTCCAGCAGTCGGCTCGTAACGCGCCGTCCGCTGGGACTTTGAAGGAGAAGGAcggaaggaaggaggaagtTCTCTATCTTTCACAGCGGGATGTCATCGACGTTCTTCATCGCGTGTCTGGGCGTCACGGGGTCTCGAAGATACCGGCGCAAGCTTCTTCCGATGCGAGGCAGCCGATACACATCGATTTGGACGACGGGGAAAAGATTAAAGGAGTCAAGGCTGATCAAGATTCGGAGActcaaaagaaattgaaatgcGAGCAGTGCGATCGCGTTTGCGTGAACAAGGAACTCCTGAGAAAACATAGGATTGTCCACAGCAAAGTCTTTCGGCACGAGTGCCAAATCTGCGGCAAAAAATTCAAGCGGTCGACCGAGCTCAAGATTCACGGGAGGACGCATTCCTCCGAGAGAAATTTCCCGTGCGAGGTCTGCGGAAGTGCGTTCAAGCTGAAGTCTCAGTTGGTCGCCCACGCGAGGCGACACACGGCCGATTACCGAGTCTTCTGCAAGCTCTGCGGCAAGGGCTTTCACAACAACAGCGACTGTCAGTCTCACAATAAGGTAAAGCACGCTGCCAAGGAACACGCGTGTTCCTCCTGCGGGAGATCCTACAGGGAAGCGTCTCTTCTTCGCCGCCATCAGAGAATCCACGAGCCGGATTACGTGCCGGACAAGCGGTTTCAATGTGAGATCTGCGGCAAGACCTTTGTCCTCCGCAAGTCCCTGGAAACGCACGTCAAGAGTCACACGGGAGAGAAAAGATACAAGTGCGAGGTGTGCGGCAAAGGACTCTGCACGAGGTCCTCTCTCCTCGATCATACGAAACTTCATACTGGACAGAAGCCGATCGTTTGCGACCTGTGCGGACGCGCTTTTACTAAGAGATCCACGATGATGGTGCACAGGAGGACTCACACCGGTGAACGACCGTATCGCTGCAACGTCTGCGATAACTCTTACACACAGAGGACGAGCTTGGTTATTCATCAACGTTATCATTCCGGCGAACGGCCATATGTCTGCAAGCTTTGCTCGAGAGGTTTCGTTTCCAATGCGCAGCTCAGAGTTCATCAGAATTCTTGCCGATGA
- Protein Sequence
- MRLINGKKSSNPLDQRNGTLLLESSSVPETRVGEPGQEQGSQGCFSVLACAKDSDAETHADKHACRAAEDETPAASRNSSEFQQSARNAPSAGTLKEKDGRKEEVLYLSQRDVIDVLHRVSGRHGVSKIPAQASSDARQPIHIDLDDGEKIKGVKADQDSETQKKLKCEQCDRVCVNKELLRKHRIVHSKVFRHECQICGKKFKRSTELKIHGRTHSSERNFPCEVCGSAFKLKSQLVAHARRHTADYRVFCKLCGKGFHNNSDCQSHNKVKHAAKEHACSSCGRSYREASLLRRHQRIHEPDYVPDKRFQCEICGKTFVLRKSLETHVKSHTGEKRYKCEVCGKGLCTRSSLLDHTKLHTGQKPIVCDLCGRAFTKRSTMMVHRRTHTGERPYRCNVCDNSYTQRTSLVIHQRYHSGERPYVCKLCSRGFVSNAQLRVHQNSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131004;
- 90% Identity
- iTF_01199583; iTF_00770545;
- 80% Identity
- -