Plin008135.1
Basic Information
- Insect
- Phylloecus linearis
- Gene Symbol
- -
- Assembly
- GCA_030142575.1
- Location
- JARQTE010000367.1:193449-194654[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.3e-06 0.00037 20.8 1.6 2 23 72 94 72 94 0.98 2 11 2.6e-05 0.0018 18.6 0.2 2 23 100 121 99 121 0.95 3 11 1.2e-08 8.2e-07 29.2 1.1 1 23 127 149 127 149 0.99 4 11 0.00019 0.013 15.9 1.3 1 23 155 178 155 178 0.96 5 11 6.5 4.6e+02 1.6 0.1 5 12 187 194 186 197 0.80 6 11 2.8e-05 0.0019 18.6 5.2 1 23 201 223 201 223 0.97 7 11 4.9e-07 3.4e-05 24.1 1.2 1 23 229 251 229 251 0.98 8 11 6.8e-06 0.00047 20.5 0.2 2 23 258 279 257 279 0.97 9 11 0.00057 0.04 14.4 1.4 2 21 286 305 285 306 0.94 10 11 2.8e-05 0.002 18.5 3.7 1 23 311 333 311 333 0.97 11 11 4.4e-07 3.1e-05 24.2 4.2 1 23 339 361 339 361 0.98
Sequence Information
- Coding Sequence
- ATGCatagtatttcaattaaaaactcAAGCTTTCCTCTTCAGGTGGCAACTTTAATCAAGCAAGAGAAACATTGCAGTAAGgagaataattcaaatgaagaaataaaacatcCCAATAATCATATCTTAGAAAAAGCAACTATCATAAAAAGTACAAACATAGAAAGAGATGCCATAAAAACGCCGCCATTAAAATCTATAAGGAAGGTGGCACAGTGTCAGATTTGTCAGAagctttttacaaaaaattcttctcttaAAACACATATTCAAACTGTCCATAATAATGAACGCATCCCATGTCCAGTTTGTCAAAAGCTCTTCACACAAAAATCAGGTCTCGGTAGACACATGTTTCTTCACAACGGAGAGAAACCATTTAAATGTCCTATCTGCGAAAAAACATTTATCCAAAAGGGTCATTTAACTGTTCATATGCAAGTTCACAAGAAGAGAAAACAGTACAAATGTGAAATATGTGACATAACATTCCCCACAAAAGAAATCCTCTGCAAGCATACAAGCAGCGAACATTCTGAAAAACCATTTATCTGGAATATGTGTGGAAAGAAGTTTCATACGCATACATGGGAAAGACCACATAAATGTGTTTACTGTGAAAAATCTTTCACAAAAAGATCTCATCTAGCAGTGCACACCAGTAGTCACACAGGAGAAAAGCCCTATCAATGTAGCATTTGTGGTAAAACATTCGTAACACAAGGAAGATTGAATAAGCATTCCACAACGCACACTGAGAACagATTACAAAAATGTGCATACTGTGAAAAGGCTTTTGCGAACAAGGATTACCTTCTGGAACACGTAAGAATTCACACTGGTGAGAAGCCTCTTCAATGTCACATATGCGGACAGTCCTTTGAGATGAGACACATGATCAAAAGGCATGTACGATTCTGTACAAGAAGTTACTGCTGCGATACTTGTGGGGAGACATTTAAGCGTAAACTGCATTTAGACATACATATGTCTGTACACACTGGTGAAAAACGCTTTGAGTGCGAACAGTGTGGAAAGTCGTTTAAGCACAACACATCTTTGAATAAGCACAAAAAAGTTCATGCAAGAGAACTACAGTATGTTTGCGCAGAATCAAGtctttaa
- Protein Sequence
- MHSISIKNSSFPLQVATLIKQEKHCSKENNSNEEIKHPNNHILEKATIIKSTNIERDAIKTPPLKSIRKVAQCQICQKLFTKNSSLKTHIQTVHNNERIPCPVCQKLFTQKSGLGRHMFLHNGEKPFKCPICEKTFIQKGHLTVHMQVHKKRKQYKCEICDITFPTKEILCKHTSSEHSEKPFIWNMCGKKFHTHTWERPHKCVYCEKSFTKRSHLAVHTSSHTGEKPYQCSICGKTFVTQGRLNKHSTTHTENRLQKCAYCEKAFANKDYLLEHVRIHTGEKPLQCHICGQSFEMRHMIKRHVRFCTRSYCCDTCGETFKRKLHLDIHMSVHTGEKRFECEQCGKSFKHNTSLNKHKKVHARELQYVCAESSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00254516;
- 90% Identity
- iTF_00770541; iTF_01199579;
- 80% Identity
- -