Basic Information

Gene Symbol
-
Assembly
GCA_030142575.1
Location
JARQTE010000470.1:326686-333792[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 7.8e-06 0.00054 20.3 1.0 1 23 194 216 194 216 0.98
2 31 0.0034 0.23 12.0 1.9 1 23 239 262 239 262 0.96
3 31 0.00028 0.02 15.4 1.0 2 23 269 291 268 291 0.96
4 31 0.0004 0.028 14.9 0.5 1 21 311 331 311 332 0.95
5 31 0.0012 0.081 13.4 0.8 2 23 429 450 428 450 0.96
6 31 0.018 1.3 9.7 0.3 1 23 456 479 456 479 0.91
7 31 0.00015 0.01 16.3 0.1 1 23 552 575 552 575 0.96
8 31 0.012 0.87 10.2 0.7 1 23 581 604 581 604 0.96
9 31 0.15 10 6.8 1.5 1 23 617 639 617 639 0.97
10 31 3.2e-05 0.0022 18.4 0.6 3 23 684 705 682 705 0.96
11 31 0.01 0.7 10.5 0.8 2 23 768 791 767 791 0.94
12 31 3.9 2.7e+02 2.4 0.0 2 23 800 822 800 822 0.84
13 31 0.051 3.6 8.3 0.0 2 23 829 851 828 851 0.95
14 31 1.6e-05 0.0011 19.3 1.2 1 23 859 881 859 881 0.98
15 31 0.053 3.7 8.2 1.2 3 23 913 935 911 935 0.91
16 31 0.00026 0.018 15.5 3.3 1 23 938 961 938 961 0.97
17 31 0.037 2.6 8.7 0.5 2 23 968 990 967 990 0.95
18 31 0.004 0.28 11.7 5.1 1 21 1017 1037 1017 1038 0.95
19 31 0.0034 0.23 12.0 1.8 2 23 1052 1073 1051 1074 0.93
20 31 0.26 18 6.0 0.9 1 23 1077 1100 1077 1100 0.94
21 31 0.021 1.4 9.5 1.4 2 23 1107 1130 1106 1130 0.91
22 31 1.2 84 4.0 0.2 2 23 1138 1160 1138 1160 0.95
23 31 3.9 2.7e+02 2.3 0.0 2 23 1167 1189 1166 1189 0.87
24 31 0.28 20 5.9 2.7 2 23 1198 1220 1198 1220 0.96
25 31 3.8 2.6e+02 2.4 2.0 2 23 1226 1248 1226 1248 0.92
26 31 3.3 2.3e+02 2.6 0.0 3 23 1311 1332 1309 1332 0.93
27 31 0.0003 0.021 15.3 0.9 1 21 1358 1378 1358 1379 0.95
28 31 0.62 43 4.9 1.3 2 23 1478 1500 1477 1500 0.93
29 31 0.76 53 4.6 0.4 2 23 1507 1529 1506 1529 0.94
30 31 0.86 60 4.4 2.5 1 23 1540 1562 1540 1562 0.97
31 31 0.05 3.5 8.3 0.2 3 20 1571 1588 1571 1590 0.94

Sequence Information

Coding Sequence
ATGCGTAATTTACAAGTGCATATGCTATGCAGGCTGATCTATGTGCCACTGataGCGGAGGACGATCGTTTGCCAAAGTGTTTATGCTACCGGTGCATGTACAatctggaaaatttttatgaCTTCAGAACTGCATGTGTCAATGCGGTGGCATTGTTGGAAAGATGTTTACCCTCCGGTGATACGAGTAACAATGGAGCGCAGACTCATATGGATCAGTATACAGAGCTGCGCTCTGAACTTctcaaagagaaggaaaatatgCCTATACTCATTCCTGAAGCCCCCATAGTCAATCCCAATGCAGCACTGGGCACGCCACCAAGACTGAATTCTGATGGCGAAGCGGATCATGAGATTGAAGAGATACTTGATCAGAGTGGCACCGATGAAGgtcAAGACGAGCACGAGGATCCTAAATCGGACGAGTATGAAATGGATATGGAAACGAATCCAAGTGATTTCCTGGAGATGACGTCCATCGTCACTGACGACGTCGAGGACATACGATCTCTTCCTATGCCACTTGAGAAACAAGACACCAATGTTTTCCAGCACACGTCGGAGCAGCACGAAGTCTACGTCTGTTCTTTGTGCAACAAAGCCTTCAGCTCGAAAGGGCATCTCTCCTTGCACGCTAGGATCCACGTGGGTGCTGGTGATGTAATCGGTGAAAAAGTTATCACTGACGATCACACTTCCTACAAGAGACCTTATCAGTGCGACCTCTGCAATAAGTCGTACTCGACGGCAAAGCACAGATGGGGACACGTCTCCACGACGCATAGGGGTCATCCAGCTGTTACGTGCAGATACTGTTCTCGAATCTACTCGACGAGAACGAACCTGGAGGAACACATAAAGTCTCGTCATGCGGGCTTACCACCGCCTCCGGAATTACCACTTCCCTACGTTCAACCTGACAACAGGTTCCAGTGCAAGACATGCCCAAAGATGTACACCAACATCACCGATCTGAATAAGCACAGTCGAGTCTGTCTCGGCGAGAGACGTAGAGAACTACCGAACAAGATTTCGGTTCAGAAGAGTAAGAGTCTTGTAGACACGTCGGATCTATCTAGTATGGACTCCGATGACGAGAGTAAGGACTATCGGGATGCCGAAGCGAAACTCGCCAAGAATCCCCAGCTGACTATACTTAAGCAGGCGCTGATCAAGGGCGACAGCCTTAAGCGGGATTACGAGGACAAAAATAGAATTGGCTCGAAACCTAAAAAGGTTGCGAGGACAGACAGCAGTGAAACCGATGCCCAGAAGAGGTGGTACTGTGAAACCTGCCCGCAGAATTTTACGTCGGTGGAGCATTTGAAGGAACACGAAATGACCCACGACGTGGATAAACCCTACATCTGCATCCTCTGCGAGAAGGACTTCGTTCTGAAATCTTCTCTCAGTAGACACATTTTATCCTCTCACGGAGTCGATCCTTGTCCAATAGTCGAAAGTGATAAGTGTCTTAAGAAAACAGTGGCTAATATGCAAATGCGTAATAAACAGGCACAGATAATCTGCAACGAGTCCAAGTTAACCAAAGAAGCATCCCAATCTCCATTTTCGCCAGAGATGAATATGGATAACGACGAGGAGGATCGTGAGAGCGGCCACGAGAATATGATTGAAATCGAGACTGTGTTTGTCTGTGAAATATGCACAAGGGATTTCAATGATCGTGCGTCATTGTGGTTACACATCAGAGCGACGCACAAAGAATTTGCAGCGTTTGCTTGTGGAGTCTGCTTAAAGATTTGCTCGGACAATACTCAACTCTTGAATCACGTTAATATGTACCATGGTGGCTCAAAGCTTCAGGTCTCGGAACAGAGAAGGTATAGCTGTACAATCTGCGGTAGGCAACACGATTCCAGGAAGAAGCTCATCACTCACGTCTCCATTCATAACGTCGATCCTGGTTATGATCCAGCGAGTTTTGTTCAACTGAacagtaattattataatgagaATCTGAATAGTAACGAAGCCAATGAACAGCCTATTGATTTTGATGGCGAGGATGGAGAGAAGATCGACTGCTATATATGTTACAAGTCTTTTCCTAATGAGGATCATCTCATTAGGCATCAGCGGAATGCTCACAAGTCCGAACCCATGGTGCAGATGGGTGATCCTGGCAATGGTAATGGATCCGGTTCTACGCCAGGCAACGGAAATCGTGCTCAGTATCATTTGTTCTTCGTTTGTGAACTCTGTGGCAGTTCGCATCCAAGTAAATGGGAACGCTGGCTACACGTTAGTGGAGTGCACAGTAATGAACCTGCCATAAGGTGCGAGCGCGAAGACTGCGGAAAAATATTCGCTACCAGGTCGCTTCGCAACGAACACGTGCAGCATCATCTTCTTCAGGGTGCTTCGCCAAATACCTGTGAGATCTGCGGGAAGCTGTGGGGCAGTCGTGTGGATTACTGGAAGCATGTAATGGGTGTGCACTCTGATACGGTACCTTTAATCTGCGGGGTATGCCTGAAGGTTTTCCCTGATGTCATCCAACTTAGTGCTCACGTCAAGTCGAATCATTGGCCTTTGACCAACGGAGACTTCAGCTGCGACATCTGCGGAAGGCCGTACTCCAATAAATCAAAAATGTCCAGGCATAGAAAAATACATGGTCTGGATATGGATAGCTATGCCAACAGCACTCTACACGAGGCTATGAACGATTCTAGGCTAGACCAGGGTTCTCATGAGAGCGACCTCATCTGCGAGATGTGTTCCGACCTCAAATTCACTAACCTGGATGACCTGTGCAACCACAGAAGAACAGTGCATGGACTATTCCCTTGTGATCTTTGTAATAAGTGCTACGGGCGGACCTCACACCTTTGGAAACACGTCAACCGCGTTCACAAGGGTCACGAAGACGTCACCTGCAGATACTGCATGAAGACCAGCGCCTCGAGGGATCATCTCGCTGCTCACATAGCCAAGATACACAGGTACGAGCCGGAGATGAAGAAGGAAATAAGGGAGTCATCTATCTTCAAGTCGCCTAATCCTGAGGACGAGACTCTTCATCATTGTGAAAAGTGTAACAAAGGTTTCCACAAGAGGTATCTTCTCCGTCGTCACATGAAAGGCTGTCAGAATTACAGAAAGGATCCTGGTGCATTGCTCACCAGGTGTCGTGCCTGCGAGAGGATATTCAAGGATCGCGCTAGTCTTCAGAAACACATTGAGAATCATCACAGTACCTATACTTGTCATCTCTGCGATGAGACCATAACCTCCAAGTTAGGTATCATGACGCACAATAGAGTGAATCACATGAACCATCCCGACCTCACTTGTGACTATACTAGTTGCAAGAAACTATTCCGTACCAAGGAGGACCTGGAGTCTCATCGCAAAGATCACAAGTACCTTGGTACTCCTAACGTCTGCGACTTTTGTGGTGATACTGTTGAGAATAAGCTTAAGCTCAAGATGCATATACTGTCCTTACATCGTAATGAAATTGGTGTATCCTGTGGTGTCTGTCTTATACCCATGAAAGATCCGAAGGAGCTCAAAAGACACGTAGAGGACGTTCACAGGAGTATACTGTCTAAGCCTAACACCTGTCAGGTGTGCGGTAAGCAGTATGCATCCAAGTGGAAGGCATTTGACCATACGAAAAAGTGCCACGGCAAGGTGTTCAGGACGTGTAAACAGTGTCTCGCAGTGTTCACAAGTGACGAGGATATAAAGCATCACTACGAACACGTTCATAACGTCCCCAAGGATCAGCTCGCTGGTTTTGAGTTCAGGTTGGACGTCGGTCCCAAGCAGGAGGAGTTTGACACCCCTGATGTCGTTGTTAAGGAAGAGCCTGAAGATCTTGATTTCTACGAGGAGCCTTGTGGGGAAGACTACCACAATTCCAAGAGAAGGAGGTCGTTGTCTGATACTCTGGACTGTGAGATGTGTCCCGAGATCTTCCTGAACGACGTCACCCTGGCCGAGCATTACAGAAACGTTCACAATACGGATCCTATGCGTATATTCAAAAAGCTAAAGCTCGACTCTGCAAAGCGGAAGACGAAAAATCGCGAAAACTTTGAATGTAAGAACTGCACAAAGCAGTTCTCCACGAAGACTCTCTTCTGGAACCATATAAACGTCTGCTCCATGCGTAATTCTGTCAACAGAGACGACAGGGTTTACCCCACGTCCATCCTAGAGTCTCACCTCAAGAACAACAATCAGATCAAAAAAGAGGAACCTGAACCCATTCTCAATGAGTCCAATCTGAACATCCCAGACTTCAATCTCTTCGAGGATATTAATATGCAGCTCTCTGGACAGAAACCTGTACCTAACCTCATGCCTCTGTCTCATATGAAATCGCTGTCCAGTATGAAGTGTTCGAGAAAGGACTCCAGGAAGGTGTACGACGAGTCAACGAATACCGAGTGTGCCTGTGAAGTCTGTGGTAAACAGTGGCCTGCTAAGAAGCATCTCTGGCAACATCTCATAAGATTTCACAGAGCTGAAGCTGCTGTCACCTGTGGCGTTTGTCTGAAGCTCTGTAAAACTTATCAGGATCTGGCGGATCATCTCAAGGCAGCCCACGAAGCCATCCTTACCTGCGAGGGTAACAATTTCACTTGTAAAACCTGTGGCAGGTATCATAATGCTAGAAGTAAATTACTCTTGCATATGAGCATACACATCAACTGTAATGGTAGCAGCTGGTGTAGAAAATGTCAACAGAGTTTCGAGAGTGAAAGTAAACTCAAGGAACACGTCGCCATATGTACTGGTGGTAATCAGGTAGAGTACGAGGAGCATAGTAACGACCTGGAGGATGCTGCCAAGAACAATGAGAATGATCACGATTATAAGAATATTCTTATGGAGGATGAGAATTCCTTGATGGAGGAAGTCGACGAGGTCGAGGAAGTTGAGTTTGAGACCGAAGCTTCTGATAATCGTGAGGATAGTAATTCCGACGATAGCGATGATTCCGATAGTGGTAGCAATCCTAGTAGTAGTAATGATGAGgataatgagaatgagaatgaggaCGAGGCTGAGTGTAGGACTAACAGCAGAGCTACTGGAGTTAGCAGTGACAGTGAGAGTGAAGATCAAGATTCTGATGAGGATAACGTTAATCTAGCTAAGGATCATCGCCTGGAGGAGAACGAAGATATCAAGTGTAATACCATTGTCAAGACAGAACCTGAGGATGATGAGTGCCACTATCATCAGGATAAGGAAGAGTCTCCTGCATTGAAGGTAGACGAATATCCTATGGAGGAAAGGAAGGATCATGAGAATCATGAGATTGTCAAAGTCGAGGTTGATGCGCCGGATTACTCTGACGATGACGCAGAtgaggatgaagatgatgGACCCCCGGTACTTAGTCCAATGATGCCATTACCACCGGTGCAAGAAGCAGAACATGACAGCAGACACTCGGACGACGAGATAGAGCATGAATTAACGCCTATGGTGTCTATCAAAAAGTCAGATGAGACTGAAGgggacgacgatgatgatcaCCAGGAATTGAAGGATCAAATGGAAAATGGTAAGTCGACCTCCAGTTCGTCAGAGTATTATGAGAAATCTGATCCGCAGAAGGTGAGTCCAAATGTGCCTTCGCTAGTAGTGGGAGAATCACAGTCAGATACGGAAGAGGAGGGCGAGGGTGAGGATGACGAAGAGGAGTACGATAGCCAAATGGAAGCCATGGATCAGGacgatgaagaaaataaaaggttcATCACTTACGACACTCATAACACTGAGGACTCGGTCGAGGGTAGCTTCGCAGAGAATTCCGAAGACGAGACAATGGAGGTCGAGGTTGCCGACGGAGATGGTAGCGTACAGATACACGACCTGGACGGTACTGTACTGATGGTAGCGAATGACTCAGACGGTAATCAGATTCTGATCCAAAGGAATGTCGCCGACGTAATAGAGAATGACGATTCTAATCCGGAAGTCACTGAGTACGTGTATCAGGAAGGGCAAGAGTACGAGCTGGAAGAAGGTTATGTGGAGTCACAGCAAGTAGACGAAGTTCAAGACGTCTCCGACGAGGTTcaggaagaggaggatgagATCGTTAATGAGGAGTCCGACGAAGGGGTCGTTACAAGGGAAGACGAAGCTGACGAAGACGAAGATATGGAACCCGAacaagaggaggaggaagaggaggagcaGGAAGCGGAAGACTGTGAAGAGGAGGTCGTCGACGAGGACGAAAATTCTCAGAAACCGATTAACAGTGCCAAAACCGAAGTGTCAAGGACGTAA
Protein Sequence
MRNLQVHMLCRLIYVPLIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPSGDTSNNGAQTHMDQYTELRSELLKEKENMPILIPEAPIVNPNAALGTPPRLNSDGEADHEIEEILDQSGTDEGQDEHEDPKSDEYEMDMETNPSDFLEMTSIVTDDVEDIRSLPMPLEKQDTNVFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRTNLEEHIKSRHAGLPPPPELPLPYVQPDNRFQCKTCPKMYTNITDLNKHSRVCLGERRRELPNKISVQKSKSLVDTSDLSSMDSDDESKDYRDAEAKLAKNPQLTILKQALIKGDSLKRDYEDKNRIGSKPKKVARTDSSETDAQKRWYCETCPQNFTSVEHLKEHEMTHDVDKPYICILCEKDFVLKSSLSRHILSSHGVDPCPIVESDKCLKKTVANMQMRNKQAQIICNESKLTKEASQSPFSPEMNMDNDEEDRESGHENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNTQLLNHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENLNSNEANEQPIDFDGEDGEKIDCYICYKSFPNEDHLIRHQRNAHKSEPMVQMGDPGNGNGSGSTPGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSGVHSNEPAIRCEREDCGKIFATRSLRNEHVQHHLLQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSAHVKSNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDMDSYANSTLHEAMNDSRLDQGSHESDLICEMCSDLKFTNLDDLCNHRRTVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCMKTSASRDHLAAHIAKIHRYEPEMKKEIRESSIFKSPNPEDETLHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCDETITSKLGIMTHNRVNHMNHPDLTCDYTSCKKLFRTKEDLESHRKDHKYLGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEDVHRSILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDIKHHYEHVHNVPKDQLAGFEFRLDVGPKQEEFDTPDVVVKEEPEDLDFYEEPCGEDYHNSKRRRSLSDTLDCEMCPEIFLNDVTLAEHYRNVHNTDPMRIFKKLKLDSAKRKTKNRENFECKNCTKQFSTKTLFWNHINVCSMRNSVNRDDRVYPTSILESHLKNNNQIKKEEPEPILNESNLNIPDFNLFEDINMQLSGQKPVPNLMPLSHMKSLSSMKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKTYQDLADHLKAAHEAILTCEGNNFTCKTCGRYHNARSKLLLHMSIHINCNGSSWCRKCQQSFESESKLKEHVAICTGGNQVEYEEHSNDLEDAAKNNENDHDYKNILMEDENSLMEEVDEVEEVEFETEASDNREDSNSDDSDDSDSGSNPSSSNDEDNENENEDEAECRTNSRATGVSSDSESEDQDSDEDNVNLAKDHRLEENEDIKCNTIVKTEPEDDECHYHQDKEESPALKVDEYPMEERKDHENHEIVKVEVDAPDYSDDDADEDEDDGPPVLSPMMPLPPVQEAEHDSRHSDDEIEHELTPMVSIKKSDETEGDDDDDHQELKDQMENGKSTSSSSEYYEKSDPQKVSPNVPSLVVGESQSDTEEEGEGEDDEEEYDSQMEAMDQDDEENKRFITYDTHNTEDSVEGSFAENSEDETMEVEVADGDGSVQIHDLDGTVLMVANDSDGNQILIQRNVADVIENDDSNPEVTEYVYQEGQEYELEEGYVESQQVDEVQDVSDEVQEEEDEIVNEESDEGVVTREDEADEDEDMEPEQEEEEEEEQEAEDCEEEVVDEDENSQKPINSAKTEVSRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01199576;
90% Identity
iTF_00297739;
80% Identity
-