Plin004995.2
Basic Information
- Insect
- Phylloecus linearis
- Gene Symbol
- lola
- Assembly
- GCA_030142575.1
- Location
- JARQTE010000273.1:1201280-1206666[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1 6.2e+03 -3.0 0.1 4 21 102 119 101 121 0.77 2 2 7.6e-09 9.2e-06 25.3 0.1 9 40 416 448 415 453 0.87
Sequence Information
- Coding Sequence
- ATGGAGGACGATCAGCAGTTCTGCCTAAGGTGGAATAACCATCAAAGTACGCTTGTCCAGAACTTCGATACCCTCTTAGAGAGTGGCACGTTGGTTGACTGCACCTTGGCGGCGGAGGGGAAGTCTTTAAAGGCCCACAAAGTGGTCCTCTCCGCGTGCAGTCCATTCTTTGAGGGCCTCCTCAGCGAACACTATGACAAGCATCCCGTGTTTATACTCAAGGATATTAAGTTCAAAGAACTCAAAGCCATGATGGACTACATGTATAAGGGAGAAGTAAATATCTCTCAAGACCAATTGGCAGCGCTGCTCAAAGCCGCCGAGTCCCTGCAAATCAAGGGTCTCTCGGAATGTAAAACGAGCGGCAATAGTGGCGtcggcggcggcggtggtggtggtggcggggGTGGTTGTGGCGGAAGGAGCGAACCCAGACCACCAAAAGTCGTCTCACAGCCAACGGCGCCGTCGTTGGACATTCCCCACCAGTCTTCCGGTCTCACCATAGAAAAGAACAGCAAAGTTCCTAGGCAGAGTTTGACACAGGTCCCCGTGGGTGATCTGCCAGAAGACTCCGCCAGTCCCAAGCTCCTCAGGGGGCTCTCCTCCAGgGAAGGCTCGCAAAGTCCGACCAAtgcgagaaaaaagaaaaggtttcGCGGTAGGAGCGTAGGCGACGACAACTCCGTTGAAAATCACGAGGCATCGAACTCGAGTGACATGCCCCAGCAAATGGGGATTCCGGCACTCGCGATCGCGCCCGTTGCCAACGAAAAGTCACACGCCGACCCCACAGACTCTCTCGGTAGTTCAGTGCTAATGCAACAGCTGGCCAAACCTGCCGACGAGATGCTCCAGATGCCGCTGGAGAATCAGCAGCCTAATGATAATTTGATAGAACCAAAGTCCGAGTACCTTGAGGATCCGGAGGAGAGTGTCGAGGATCTGACCCTCGATGACGACATGAACGatttaaatgaaatggaaCAGGATACCAACAGAGCTGGCCCTTCCCATGAATCCTCCCAACACCCTGGTGGGGGGGCGGGAGCGCGGGCTCGATCGAGCGGGAATTTGAATTATGGtgaaggtggtggtggtgcccATTGGGCCTCTCATTTCCTCGAATGTAAAAAGGGCCCTAACACGAGGCGACCGCGACCGGACGTTGACGTAGGCGCGTTGCTCAAGTCCCTGGCCAATAAGCAGGGTAGAAAATATAGCTTAGACTCGGTTAAGATGTCTCTGGAGGCGATATTGCAACAGGGCGTTAGTACCACTCAGGCCTCTGAGATGTACGGGATTAATCGTTCGACTCTGCAgttctatttgaaaaaattgaacgtTGTAAGAAGACGATGGAGACAACCTAGCAACTGGATCCAGCCTAGTCTAGCCGCGTGGCACGTTACCGGAGACAGAAGTAACGCCGGCGGCGTCGTGGGCTCGGTGGCTGGAGCTCCAGGAACGAACGACGAAGTGTTTCTTGCGGCCCAAGAGGCTGCGCAGGCCCACCGCGACTCCCAAGGTAGGCTCATCCTCGCCATTTCTTACGCGCCTCTGACCCCCGTAACAATAGGCACTCGTAATCGGCACGATATTCTAGCCAAGAGCTTTTCCGCGCCGAATCTACGTCTCTCTCTCGATTTGTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLVQNFDTLLESGTLVDCTLAAEGKSLKAHKVVLSACSPFFEGLLSEHYDKHPVFILKDIKFKELKAMMDYMYKGEVNISQDQLAALLKAAESLQIKGLSECKTSGNSGVGGGGGGGGGGGCGGRSEPRPPKVVSQPTAPSLDIPHQSSGLTIEKNSKVPRQSLTQVPVGDLPEDSASPKLLRGLSSREGSQSPTNARKKKRFRGRSVGDDNSVENHEASNSSDMPQQMGIPALAIAPVANEKSHADPTDSLGSSVLMQQLAKPADEMLQMPLENQQPNDNLIEPKSEYLEDPEESVEDLTLDDDMNDLNEMEQDTNRAGPSHESSQHPGGGAGARARSSGNLNYGEGGGGAHWASHFLECKKGPNTRRPRPDVDVGALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQPSNWIQPSLAAWHVTGDRSNAGGVVGSVAGAPGTNDEVFLAAQEAAQAHRDSQGRLILAISYAPLTPVTIGTRNRHDILAKSFSAPNLRLSLDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294592;
- 90% Identity
- iTF_00293065;
- 80% Identity
- iTF_00770468;