Basic Information

Insect: Phragmatobia fuliginosa
Gene Symbol: -
Assembly: GCA_932526455.1
Location: CAKOBD010000059.1:1624259-1636559[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.015 1.3 10.3 3.2 1 23 335 357 335 357 0.97

2 11 0.0005 0.045 14.9 0.9 2 23 365 386 364 386 0.95

3 11 0.8 71 4.9 0.3 1 23 390 412 390 412 0.94

4 11 0.067 6 8.2 0.7 1 23 417 440 417 440 0.98

5 11 0.0073 0.64 11.3 0.1 1 23 444 467 444 467 0.94

6 11 0.0039 0.35 12.1 0.5 2 20 482 500 482 506 0.93

7 11 0.00066 0.058 14.6 1.4 3 23 516 537 516 537 0.98

8 11 5.4e-06 0.00048 21.1 0.5 1 23 590 612 590 612 0.99

9 11 3.3e-07 2.9e-05 24.9 2.7 1 23 618 640 618 640 0.99

10 11 0.0021 0.19 13.0 3.0 1 23 646 668 646 668 0.98

11 11 3.7e-05 0.0033 18.5 0.3 1 23 674 697 674 697 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.015	1.3	10.3	3.2	1	23	335	357	335	357	0.97
2	11	0.0005	0.045	14.9	0.9	2	23	365	386	364	386	0.95
3	11	0.8	71	4.9	0.3	1	23	390	412	390	412	0.94
4	11	0.067	6	8.2	0.7	1	23	417	440	417	440	0.98
5	11	0.0073	0.64	11.3	0.1	1	23	444	467	444	467	0.94
6	11	0.0039	0.35	12.1	0.5	2	20	482	500	482	506	0.93
7	11	0.00066	0.058	14.6	1.4	3	23	516	537	516	537	0.98
8	11	5.4e-06	0.00048	21.1	0.5	1	23	590	612	590	612	0.99
9	11	3.3e-07	2.9e-05	24.9	2.7	1	23	618	640	618	640	0.99
10	11	0.0021	0.19	13.0	3.0	1	23	646	668	646	668	0.98
11	11	3.7e-05	0.0033	18.5	0.3	1	23	674	697	674	697	0.96

Sequence Information

Coding Sequence: ATGGAAGATGTGAAAGTATGTCGAATATGTTTGATAACGGATGTTAAAATGCATCACTTGCAGTCCTATCCCTTAAATACATATTTGGAGTCCCTCGTATCAGGAAATAATTTGGTGATAATTGGTAACGCAGAACCTTATGCGTGCTATGAATGTGCAGAGTTACTTAGGAAGTTTTACAATTTTAAGCAAAAGTTTCTTAGAAGTCAAGCTGTACTCTATGGATTAGTAGATGTCACGGGAAAGGTGAGTTCTTTGCAACTTGGACAAATAGACCGTAAATGCCTACTGCTATCTTCAAATCTGTCAACAGTTTTTCTTCCCGTTGACAATATTAATTATCCGAAAGCTCATATCAAAGAAGAGAACGAGATTGAAGATGAGATAAGTGATGTATACAAAACAGGAAGTAGTATAAAAGATGAAGACAATGAACTCTTGTGCCCTGATAGAAGTTTATCTAGTGATGATGATGATGAACCACTCTCTGTACAAAAGAAGAAGAAGATTGAAGAGAGCAAGGAGTGTCGAAAAGAAGAAACTGCTATGGAGGTTGAATTAGAAGAACCTTTTTGTAAAAATGAAGAATTAGAAGTGTTCATGACAACTGGTACATACCGGCGACCACGTGCTCGTCAAGGCGCGAGCCTTAAGGCCGCTGCATACGTGACGGGATTTTACACGGACGTGACGGGACGGGAAGTTTTGCAAACATCATTACATACAAAATGTATAGGGAAATGCATACTTCAAGGAGACACGGACGGGGCGTCTGCTGATGATGTGGTAGAACCATGTAGTCCGGTAGTATTAGTAAGGAAACGAGGCCGGCCTAAAAAAGAAAAAGTTCCTGCGCGAAGAGGTAACCGGATTAGCAGAAATGGAAACACGTTCGCTAATGTCAACGTAGATGAATATATCACGGTTATTCGTTTATCGGTAGAAGAACAAATAGAAGAGATAAACAAGAGGAAAGAGACATCAAACTACTTGAATTCTCCGTACAAGTGCAATTTGTGTTACAAGGGATTCATCGACACCCACGCGTGGAAGCACCACGTCGGTAAACATTCGCCGAGTGCTGGTGATATAGAGTGTGCAATATGCAAGTTCAGGTTCAAAACCAAGCGCGCCTTACAGAAACATTCGTCGATTCACGAGACGAAATACGCCTGTAAATCTTGTCCCTACATCTCATCAAATACAACCCAAGCAAAGCAGCACCAAGGATGGCACACAGGAGTGACGTACAAATGCAAGTTTTGCGCAGACATATTCACAGTGTGGACGTCATACATGAGTCACGTGCGAATAAAACACCCGTCGGAGTTCATCTGTGGCATTTGTGGGTACTCTTACATCAGCAAGTTGGGGCTCGCTATGCACAAGACTATGATGCACAAAGACGTTATGGAGAAAGGTGAATCTGCAGAAGAGGGCCCCTACTGCAAAGAATGCGACGTGAAGTTCGTCTCGATGGAGGCGTTCAAACGACACATGGTCATGTCAACCAAACACACGAGGAGTACTAAAACTATTAATGGTTGCCGTACATGCGGTGAGTCGTTCAAGAACGCTGAGGAGGTGAGAGTCCACCACCGCAAGGAGCACGCAAGGAAAAGACCCAAGAACTATGGGAAGAAACCACCTAATATGAGCTTCCCTGCTAAATGTGAACATTGTTCAGAAGATATTTCAAACGCTCGAGAGCATTGGCAGCACTACCGGCGAATGCACCCCGACAAGAAGTACCCCATACAGAAGAACTACGTTTGCGATATATGCGGGAAGAGTTTTAGAGGCAATGCATTCCTAGTGTACCATAAACGTACCCACTCGGAAGAACGAGCGTACAAATGCAACCAGTGCGACAAGGCGTTCTTCAACCGAACCAACCTGCAAGTGCACCAGAAGACCCACAGCGATACAAGGCCATACCCCTGCTCTGTCTGCTTTAAAGCCTTCAAGTGTAAAGGCGCACTTAATCGACATTTCAGGAGTCACACGGGCCAGAAGCCGTACGAGTGCGAGGTGTGTGGCAAGGCGTTCTCCCAGTCCAACAGCCGCAAAGTCCACGTGTACACCGTCCACCTCAAGCAGCCCGCGCCCTACGTCAGTCGCAAGCGGACCAAGCACCCGGACAAGGAGCCGCTACCAAACAACCAGTTCCTCTACCAAATATAA
Protein Sequence: MEDVKVCRICLITDVKMHHLQSYPLNTYLESLVSGNNLVIIGNAEPYACYECAELLRKFYNFKQKFLRSQAVLYGLVDVTGKVSSLQLGQIDRKCLLLSSNLSTVFLPVDNINYPKAHIKEENEIEDEISDVYKTGSSIKDEDNELLCPDRSLSSDDDDEPLSVQKKKKIEESKECRKEETAMEVELEEPFCKNEELEVFMTTGTYRRPRARQGASLKAAAYVTGFYTDVTGREVLQTSLHTKCIGKCILQGDTDGASADDVVEPCSPVVLVRKRGRPKKEKVPARRGNRISRNGNTFANVNVDEYITVIRLSVEEQIEEINKRKETSNYLNSPYKCNLCYKGFIDTHAWKHHVGKHSPSAGDIECAICKFRFKTKRALQKHSSIHETKYACKSCPYISSNTTQAKQHQGWHTGVTYKCKFCADIFTVWTSYMSHVRIKHPSEFICGICGYSYISKLGLAMHKTMMHKDVMEKGESAEEGPYCKECDVKFVSMEAFKRHMVMSTKHTRSTKTINGCRTCGESFKNAEEVRVHHRKEHARKRPKNYGKKPPNMSFPAKCEHCSEDISNAREHWQHYRRMHPDKKYPIQKNYVCDICGKSFRGNAFLVYHKRTHSEERAYKCNQCDKAFFNRTNLQVHQKTHSDTRPYPCSVCFKAFKCKGALNRHFRSHTGQKPYECEVCGKAFSQSNSRKVHVYTVHLKQPAPYVSRKRTKHPDKEPLPNNQFLYQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -