Pful023871.1
Basic Information
- Insect
- Phragmatobia fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_932526455.1
- Location
- CAKOBD010000137.1:1341640-1346235[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.3 1.1e+02 4.2 0.2 3 20 34 51 33 52 0.95 2 19 0.096 8.6 7.7 0.1 2 23 82 104 81 104 0.91 3 19 2 1.8e+02 3.6 0.6 3 23 128 149 126 149 0.93 4 19 0.00041 0.036 15.2 1.6 1 21 153 173 153 176 0.95 5 19 0.023 2.1 9.7 0.3 1 22 180 201 180 201 0.94 6 19 0.49 43 5.5 1.1 5 23 212 231 204 231 0.81 7 19 0.0005 0.044 14.9 1.2 1 23 238 261 238 261 0.98 8 19 1.3e-05 0.0011 19.9 1.1 1 23 266 288 266 288 0.97 9 19 0.00011 0.0094 17.1 1.6 1 20 294 313 294 316 0.92 10 19 2.6 2.3e+02 3.2 0.4 3 22 374 393 373 395 0.88 11 19 0.35 31 6.0 0.2 2 23 422 444 421 444 0.94 12 19 0.88 78 4.7 6.1 3 23 472 492 470 492 0.96 13 19 0.00013 0.012 16.8 1.7 1 21 496 516 496 519 0.96 14 19 0.066 5.8 8.3 0.9 1 22 523 544 523 544 0.96 15 19 1.7 1.5e+02 3.8 0.4 3 23 553 574 551 574 0.90 16 19 1e-05 0.00093 20.2 1.9 1 23 581 604 581 604 0.97 17 19 0.29 26 6.2 0.8 1 23 609 631 609 631 0.95 18 19 0.0011 0.096 13.9 0.4 1 20 637 656 637 659 0.93 19 19 0.00062 0.055 14.6 3.9 1 23 665 687 665 688 0.95
Sequence Information
- Coding Sequence
- ATGAAAACGGATGGACATAAAATGGCGAAACAAAACGCGGAAATAGTCTTGAAATACTCAACAGTGTATCCATTCAGGTTACGGGGTCAAGCTTTATTGTGCGTCTACTGCAGCGAGGGATACCAAGAACCCGTACATTTTAGAAGACACCTTGATTGTAATCACAAAAAGTTTAGCGTATCTGCTGCCTTTGCTCACTTGGCTAAAGGGAAAGATTACCTCAAGGTAGACTGTGCCAACTTAGAATGCAGGTTATGTGGAGAACCATTCTCGAACGTTAAAGATACAGCGGAACATCTTTTCAAAGAACACAATCTTAAGATAAATCTGAATTACGACATTGCACTGCAGTGTTACAAACTAGAAAAAGGTAAATGGTTCTGTTTGCTCTGCGATGCTAAGCTACCAAATATAACAAAACTTTGTCGTCACACAGTAACAGCTCATTACCAGAAGTATACTTGTGACATATGTGGAAAAACTTACATGACTCTCGAAGGTTTAAGATACCACATAAAATGTAATCACTCAGAAAAATTCTTGTGTCGGAAATGCTGGAAAGAATTTGACACAGCCGAAGAGAGAGTAAAACATCTGAGGACATCCAGAAAATGCTGGAACTTCGGTTGTATATACTGCGGGGAAAGATTTCAATCTTGGGAGACAAAGAACAAACATTTGGTTGAGAAACATGATTGTCCAGAAGTCAATTATCCATGTTCAGAATGCGAAATCGTATTTGAAAATAGGAAGCGTTTTAACAACCATTACCGAAAGATGCATACGGATGAGGCATTTGTCTGTTCGTACTGTAAAAAGGGTTTCAAAACACAAATCGAATTAAAAGACCACAGAGCCAGTCATTCTGGAATTGAAGGCCACATATGTCTATATTGCGGCAAGTCTTTTCCAAAGAAGTTTACATTAACACAGCATATGTGGATTCATAGTGCGGTTAAGCCGTTTGAATGCATACCTTGTGACAAACAGTTTAACCAGAAAGGATTTTTCTTTTTGTTTCTAGAGTTGGAACCACATTTAACGGCGAAACGGAATGCAGAGATCGTGTTACAATATTCAACTGTATATCCGTTCAGATTGCGAGGAAAGGCTATGCTATGCGTCTACTGCTGTGAGGAATACGAGGATCCTGATGATTTTAGGAGACATGTCGATGATAATCACGAACAATTTACAGTATCTACTGCATTTGCACACATAGGCAGTGCGAAAGACTATCTGAAAGTTGACTGTACCAACTTGAAATGTAGATTGTGCGCCGAATCGTTTATCAGCATCGAACATGTCGCCGAACATCTTGCAAAAGAACACGATGACAAGGAAACTCGGCAATTGTGTCTTGTCTATGATATAGGTTTGCAACCATATAAGTTAGAGAAAGACAAATGGTTCTGTTTCCATTGCAATAAAAAACTACCAACCATAACAAAACTTTGTCGTCATACCACATCGCATTATCAGCAATATACGTGTGATATTTGTGGACGAAGCTACATGACCAATGACGCTTTAAAATATCATATTAAATGCAGTCATTCAGGAAATTATGTGTGCCGAAGATGCTGGAAAAAATTTCAAACTTTAGAACAAAAAAGAGAACATGTCAGAACATCTAAGAGTTGTTGGGCTTTCGGATGTGTCAACTGCGGAGATAGATTTCAATCTTGGGAGCAAAAACAGAAACATCTAGTCGAAAAACACGATTGTCCTGAAACTAGTTATCCTTGTCCCGAATGTGATAAGACATTTCAAACTAGAAAACAATTTTATAACCATTACAAAATGGATCATACTGACGAAGGATTTGTTTGTTCTTGTTGCGGGTTGAAGTTTGGGGCCAAAAATCAGTTAGAGGACCATAGGCTAGGACATACTGGCGAGAAACAGTTTAAGTGTATAGTGTGTTCGAAAGCGTTTACACGCAATAAGAGTCTTGCCCAACACATGTGGATTCACAGTGATGTTAAACGTTTCGAATGCAAACCGTGCAATAAACAATTCAACCAGAAAGTTAGCTACAGATCTCACATGAAAGTGCACCATTCGCATATTATTGAATAG
- Protein Sequence
- MKTDGHKMAKQNAEIVLKYSTVYPFRLRGQALLCVYCSEGYQEPVHFRRHLDCNHKKFSVSAAFAHLAKGKDYLKVDCANLECRLCGEPFSNVKDTAEHLFKEHNLKINLNYDIALQCYKLEKGKWFCLLCDAKLPNITKLCRHTVTAHYQKYTCDICGKTYMTLEGLRYHIKCNHSEKFLCRKCWKEFDTAEERVKHLRTSRKCWNFGCIYCGERFQSWETKNKHLVEKHDCPEVNYPCSECEIVFENRKRFNNHYRKMHTDEAFVCSYCKKGFKTQIELKDHRASHSGIEGHICLYCGKSFPKKFTLTQHMWIHSAVKPFECIPCDKQFNQKGFFFLFLELEPHLTAKRNAEIVLQYSTVYPFRLRGKAMLCVYCCEEYEDPDDFRRHVDDNHEQFTVSTAFAHIGSAKDYLKVDCTNLKCRLCAESFISIEHVAEHLAKEHDDKETRQLCLVYDIGLQPYKLEKDKWFCFHCNKKLPTITKLCRHTTSHYQQYTCDICGRSYMTNDALKYHIKCSHSGNYVCRRCWKKFQTLEQKREHVRTSKSCWAFGCVNCGDRFQSWEQKQKHLVEKHDCPETSYPCPECDKTFQTRKQFYNHYKMDHTDEGFVCSCCGLKFGAKNQLEDHRLGHTGEKQFKCIVCSKAFTRNKSLAQHMWIHSDVKRFECKPCNKQFNQKVSYRSHMKVHHSHIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -