Pful025642.1
Basic Information
- Insect
- Phragmatobia fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_932526455.1
- Location
- CAKOBD010000150.1:1458511-1472200[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 1 10.7 2.9 1 23 885 908 885 908 0.96 2 12 0.00029 0.026 15.7 1.9 2 23 913 935 912 935 0.96 3 12 0.0013 0.11 13.7 5.4 1 23 939 961 939 961 0.96 4 12 0.00033 0.029 15.5 3.4 1 23 966 988 966 988 0.98 5 12 6.5e-06 0.00058 20.9 0.8 3 23 997 1018 996 1018 0.97 6 12 3.8e-05 0.0033 18.5 2.9 1 23 1024 1047 1024 1047 0.96 7 12 0.086 7.6 7.9 4.4 1 23 1054 1076 1054 1076 0.98 8 12 0.37 33 5.9 0.6 1 23 1080 1102 1080 1102 0.97 9 12 0.00045 0.039 15.1 1.2 1 23 1112 1134 1112 1134 0.97 10 12 8.2e-06 0.00073 20.6 0.4 1 23 1140 1163 1140 1163 0.97 11 12 0.00017 0.015 16.4 1.8 1 23 1198 1221 1198 1221 0.95 12 12 8.2e-05 0.0073 17.4 0.7 1 23 1226 1249 1226 1249 0.96
Sequence Information
- Coding Sequence
- ATGAGCGAAATATTCAATTTGAGTACACTGTGTCGTTGTTGTCATGCCGACGGTTGTTTCAAGAAACTTAACCTAGCATATCAATGCGAAAACAGTGAAGAAATCTACGAAACAATGTTGCAGGAGACTCTAGGAATTGAAGTGTTTCAGCCAGCTATGGAGCAAGCCTCGTATATGATATGTAATGATTGTATAAAGAGGCTTAGAGAAGCATTTCAGTTTCGACAACAAGTTTTAGCTTGTGAGCAGAAGTTTAGAGTATATTGTACTAATGAACAATTTCAAGTTAAAACTGAAGTTGAATTGAATGACGCTGAGATTAATAATATGAATGTAGAAGGAGTTTCGCACAGAGATGCTGATTATTCAGAACAAGATAGTGAAAAATGGCATACAGTTCCTGTAAAAGAAGATATAAGAATGAACCCAACATCGTACGAAGATGATAGTACGGTTAAAGAAGATATGCCGAGCACATCGTCGAATAGTGATACACACTCAACTTTACTTGACGGCAGATTCTCTGAAATAATTCCTCATCTATCCCAAACCAGTCAAGTTTCGGATTCATGCAAAAAACGTTTACCTGATCATGTGAAAATTAGAGCAAACAGGAAGCGTAAATCATTTTACAAGACACAGTTGATAACGAAACTTGGTAACGAAACTCCACGCGAAGTTGAAGCGTATGTGAAAAGCAAAAGGTGTAAAATTGTTAGTTCTTCTGTACCCAATTGTGAAAGATCTTTGACGAATAAAGAATCTCAAATGAGGCCTCAGGGACAATGTTCGACAAATTTAACTCCATATTCTCAAAGTGATTTCGATCAAGATTTCGTAAAATATTTCATAAGTTCGATGGTGTCTTTATCTTCGGTCAAAGATCCTTACTTTCGACGGTTAATCCAACGTTCCAATCCTGATTTAAAAATAATGAAGAAGCAAGCCCTAGGGAAAAAAATAATTCAGTACTTTAGTGACGAACGTAAAATAGTAAAGCAAGAACTGGCAGAAACAAAGAATGTTTTTGTGACATTTGATATTTGGTCTAGATCTCGAACAGGCTTCATAGGTGTAATAGCTCATTGGCTCGATGAACATACGTTAAAACGCACATCTAAAGCTTTGACGTGTCATTCGTTCAAAAATACTTACAGTCTGAAAACATTGTTTATTGTGATTCGTCAAATAATTAATAAATTTAATTTGTTTCACAATAAAAAATTTAATACTCTTGTGTTAACTGAGGAAAACAAGATTATAAAAGCTTTTGAGAGTTTCGGTGTTCATTCTAGTAACATTTTCTGTGGCGAAGAAAGCCAGTCTTGTGCTGAATCTCAATTACATACTAAAGAATCGGATCGTAATTGCAACGATAATAAAATTTCAACTGAAGACTTCTTAAAACAACATTTGCCGTATCAATTAAAATGTGCAACTGATATTCTGAACCAATGTGCTATCAATGCTAGTAAGGTAGTTGAAAAAACAGTAATTCACAAACAAACTTTAAAGAAATGTAACATATTATGGAAGGCTACAAGTACACACAAATCCGGTCGTATTATTTTTAGTGTCTTGGGTCACGGACTAACAAAACCAAATATCACAAAATGGAACAGTATATACAAAGCCTTAAAAGAAATTTATAATATAAGAGACAAGTATAATTCATTGCGGGTAGCTTTAAGGTTAAATAAAACTATTTCTGAAACGGAATTCCACTATATAAATGAATATTTGACGAGCACACAACCTATAGCAGATGCTCTAGATATTCTCCAAGGTGAAAATGACAATTATTACGGCAATTTATTCCCAACAATACTAACATTAAAAAAGAAGTTAGTTCAATTGCTCGCAGAAGGAGATACGTATTCGTACTATAAAAAATTAGTCCAAGCTTATCTGAATTCTGTTGAATATCAGTTCAAGGACTATCTGAACATTTCTGGTGAAAATGCAGAAAATGCTGCATTAGCTGCAATAACGCATCCGAAATACAAAAAATTGAAATGGTCATCTTTAATTGAAGAATCGCAATTTCTGAGAATTAAAAACCTACTTATTAGTGAAGTAGCAAGTAATATACCTAAAACCACAGATAACCTAAAACCATTGTTCGAATCAAAGAAAGACGACTTCTTTGAATTTGATTCCGAGCAAATTACAAACGATCCGTCGTCAAAAGCTGAGCATATTGTATATAATTATTTTTCTGAGAATAGTTCAGAGTTGAGTATGCTCAACAATCATGTGGAGATCAAAAAACTTTTCATAAAATACAACACCCCGTTACTCTCGTCGGCGTCTGCACCGCGGATGTTTTCTAATACAATGATGGACTTCATGAAAGTAGACGATGTGTCTGAAATTTGGCAGGAAAGACTTGTGCTCAAAGTTAATTTAGAAGTTACAATTATTAAAGTGGACCCCGTTGAAGTGGAAATTGAAAAATCTGATGTCAAAAGCGAAGAAAATGAGGACAAAAAAAAGATGGTAGAAAAGAATATCAAACAGATAGAGAATCAACCTGAACCTCCTGAAGATAAATTGCGTCTCTCTGCTGTTCTTAAGCGCAAAAAATTGAAAGCCTGCCACAAAATTTACGAAACGTACATAATAAAAGAAAGAAAAAAGAACGAAATGATATATTCGTGCAAGAGTTGCGATGAGAAATACAAGAAGAAAAAAGATATTTTCAAACACATTAAAGAGCAACATTACACCCGATGCAAATGTGAACAGTGTGGCAAGCCTTTTCAATATGAAAGACAACTACAATTACATGTCAAAACTATTCACGGCAAAACTCACGCCTGTCAACATTGTGGAAAAAAATTTGACAATAAATACAGAATGAGGGCACATGAGAAAACGCACGTACACCAAATGTATCAATGTGATATATGTCAAAAAGTACTTCGATATAAATGTACACTCAGAAAACATATCTTACAACACAATGGATACAATAGAGGCATGCTCTGTGACTTCTGTGGAAAGTCCTTCACACAAAAATCCAACTTAGATTCTCATGTCAAATCCGTTCACTTAAAAATGAGACCATTTTCATGTTCCATCTGTAATAAAACGTATACAGCAAAAAAACACTTAAAAAATCATATTAAATTAGCACACAGTGGAAACCCTAAACCGTATCAGTGTGACATGTGCACAAAATCATTTGCCTGTCCGAAGTTTTTTAAAATCCACAGATTAAGACACGAAAATCGTTTTTCTTGTAGATATTGCTCTTCAGTTTTAAATAGCAAAAATGATTTAGACATTCATACGAAAGCTCACGCAGAACAGAATGTATTGAGTAGTTTGTTTTCTTGTCATATCTGTGGGAAAGTCCTTCTGTCAAAATATACATTAAACCGTCATTTAGAAATCCATATTGGTATTAAAAGATTTGAATGCAATATTTGTGGCATAAAATTCACCCAAAAAGCTCTCGTGAAACGACACCAGTTGAGAATACATGACTCCAGTCGCAAAATAGAGAAAGTTAAGTGTGACCTGTGTAAAAAATTAGTGAAGGACCTTGATAAACATATGGAGGTCCATGATGCGGATATGAGGAAGTATTTTTGTGATATGTGCGGTAAAAATTATCCGACGAATAATTCTTTGAATCGCCACAAACAGCAGAAACATTATGGTGTGTCTTACGACTGTGATATCTGTGGCAAACAGTATATAAAAAAGGGTAGTTTGAAAACTCATAAAATGAAAGTTCACAAAATTAAAAAAGAAATCTTAGATAGTGTTGCTACTGTACAAAATTTAGAATTGAATCGATTAGTGACGTGA
- Protein Sequence
- MSEIFNLSTLCRCCHADGCFKKLNLAYQCENSEEIYETMLQETLGIEVFQPAMEQASYMICNDCIKRLREAFQFRQQVLACEQKFRVYCTNEQFQVKTEVELNDAEINNMNVEGVSHRDADYSEQDSEKWHTVPVKEDIRMNPTSYEDDSTVKEDMPSTSSNSDTHSTLLDGRFSEIIPHLSQTSQVSDSCKKRLPDHVKIRANRKRKSFYKTQLITKLGNETPREVEAYVKSKRCKIVSSSVPNCERSLTNKESQMRPQGQCSTNLTPYSQSDFDQDFVKYFISSMVSLSSVKDPYFRRLIQRSNPDLKIMKKQALGKKIIQYFSDERKIVKQELAETKNVFVTFDIWSRSRTGFIGVIAHWLDEHTLKRTSKALTCHSFKNTYSLKTLFIVIRQIINKFNLFHNKKFNTLVLTEENKIIKAFESFGVHSSNIFCGEESQSCAESQLHTKESDRNCNDNKISTEDFLKQHLPYQLKCATDILNQCAINASKVVEKTVIHKQTLKKCNILWKATSTHKSGRIIFSVLGHGLTKPNITKWNSIYKALKEIYNIRDKYNSLRVALRLNKTISETEFHYINEYLTSTQPIADALDILQGENDNYYGNLFPTILTLKKKLVQLLAEGDTYSYYKKLVQAYLNSVEYQFKDYLNISGENAENAALAAITHPKYKKLKWSSLIEESQFLRIKNLLISEVASNIPKTTDNLKPLFESKKDDFFEFDSEQITNDPSSKAEHIVYNYFSENSSELSMLNNHVEIKKLFIKYNTPLLSSASAPRMFSNTMMDFMKVDDVSEIWQERLVLKVNLEVTIIKVDPVEVEIEKSDVKSEENEDKKKMVEKNIKQIENQPEPPEDKLRLSAVLKRKKLKACHKIYETYIIKERKKNEMIYSCKSCDEKYKKKKDIFKHIKEQHYTRCKCEQCGKPFQYERQLQLHVKTIHGKTHACQHCGKKFDNKYRMRAHEKTHVHQMYQCDICQKVLRYKCTLRKHILQHNGYNRGMLCDFCGKSFTQKSNLDSHVKSVHLKMRPFSCSICNKTYTAKKHLKNHIKLAHSGNPKPYQCDMCTKSFACPKFFKIHRLRHENRFSCRYCSSVLNSKNDLDIHTKAHAEQNVLSSLFSCHICGKVLLSKYTLNRHLEIHIGIKRFECNICGIKFTQKALVKRHQLRIHDSSRKIEKVKCDLCKKLVKDLDKHMEVHDADMRKYFCDMCGKNYPTNNSLNRHKQQKHYGVSYDCDICGKQYIKKGSLKTHKMKVHKIKKEILDSVATVQNLELNRLVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -