Pful015862.1
Basic Information
- Insect
- Phragmatobia fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_932526455.1
- Location
- CAKOBD010000091.1:708906-743091[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.7 1.5e+02 3.8 0.3 1 23 521 543 521 543 0.95 2 10 3.1e-05 0.0027 18.8 4.1 1 23 585 607 585 607 0.97 3 10 0.0075 0.66 11.2 6.3 1 23 630 652 630 652 0.98 4 10 4.2e-06 0.00037 21.5 0.4 1 23 658 680 658 680 0.93 5 10 2.5e-07 2.3e-05 25.3 0.3 1 23 686 708 686 708 0.98 6 10 3.6e-05 0.0032 18.5 1.5 3 23 716 737 714 737 0.96 7 10 0.00021 0.018 16.2 2.2 1 23 743 766 743 766 0.94 8 10 3.2e-06 0.00028 21.9 0.8 2 23 773 794 772 794 0.97 9 10 1.3e-05 0.0011 19.9 0.5 1 23 800 822 800 822 0.96 10 10 0.03 2.7 9.3 0.1 1 23 828 852 828 852 0.93
Sequence Information
- Coding Sequence
- ATGGCCTTAAATTCTTGCTTAATATGTAACAGCAGAGTTATCAAATCTTTAAGGAACATTTACAATATTTTTGAGGAACATAGTTCACCCATCAAAGATGAAGCATCTTCTGCGAGCTCGGTGCAGTCTGGTAAGAAATTGTCAGAAGTTGTAGGCAATATTGTTGGCATAAGTCTTGAGGAGAACAAAGTACATTCCAACATAATATGCAAGAAGTGCTACAAATCGTGCATGGAATATGATATACTGCAGACTAGGTTAACAAACTTGAAAAAGGAAATTCTAGATCAATTCAAGAATTCTATAAGTAGTAATAATCTAGACTATAACAATTATCAGAATTCAGTCATCTCGAAGAACAGCATCCCTGTTCCTTCAATACAGAAACAACCAACTATCCTAGGTAAAAAGCTGGTGTTGCCTGCTTCGAAATTGCTGCCCATACCGCCAGATTTCTTGTTGAAAGTGAGGAAATTGCCAGCATTCTCTAAGGGTAATATTGTTTTACCACAAATTCAGACTGCAAATGCCTCAACACTTAACCTCAAAGTCACAGTTGGAACCTCAGTTCTCACTCAAACTATTAAAACCACAACAACCTCAAGTCCAGCAATAAAACAAACCACAAACTTACTCACATCTCTGACAAATGACATGGAACAGCTGGTCACGTCTCAAAGTCATACGTCACCAAAAACTTCAATATTAAATTTCAACGTGAACTCTTTGCCGAATAACTTCTTGTCCGAGGCAGTGTTAAGTAGAACCGATGATGAAGATAATATTGGAGACAGTAAGAGTAATGGTCATGAAAGAGCAAATGATGTTCAGCCAATGGAGATTGGTGGAGATTATGCCATCTCCCTGGTGCCTGTGTCGGCTGCTGATAGCAATAACTTGGTGTTAGAAGTTGAAGGAGTTAAGTCCAGTTCCAAAGCGTCATCAGAAGTAGCGGAATTCTTAAACGTAGAAGACCTACAATCCTTAGACCCTACAAATGAAGAACACAAATATATACTTGGCAAGCTGGGGATCCTGAATGGAGGGGAAGACGAAATTGATGAAGATGATGAGGCACATACAATAGTAGTGGATGGTGAGAACGGCTCAATACTCCGCATGGTATCCGGCCAGAAGTTCATGTACGAGGGTGGAGAAATATCACTGGTGATGACTGAGGATGACCAGCAGCAAGATGGAGACAACGAGCTCAATCAAGAACAAGGAGATGATTCGAATGATGAGACAGCCATAGAACTTCAGATGGCCGGAGATGAAGAGACTGCTAATGCTATTATAGCTGCTGCTCAGGAACAAGGTGGAGCGCTGATCAAGGTGGAGTCTGGCGAGATGTACCGCGTGCACAGCGTGGAGCCGCGCCAGGCCTCCCCCCACCGGCCCTCCCCCCACCAGCCCTCCCACCACCAGCTCGTCGCTAAGCACGGAGATGGCTTCCAGTGCCTGCTCTGCCAAGCCAAGAACGAGGGTGAAAAGCCTGAAGTGTGTGGGTCTGCGGAGTCGATGATGCGTCACCTGAAGCGGTTCCACGACGCTCGGGTCTACATCTGTAAGTTCTGCTCTGCCATCATGAGGAAGAAGGTCGACTACACCACGCATATAGCCGAGCACGCGATTTCGATGAAGGGCAGCGGAGGGACGGGGGAGGAGAGTGGGGCGGGAGGGGCGAGCAGGCCGCTGAGCATCGCCGCGCTGCTGCAGGAGCACACCTCCCAGCGCGTGGTGCAGCGCCCGCACTCCTGCCCCACCTGCCACAAGGCCTTCGCCAACAAGTACACCTACCAGGCGCACGTCAAGACGCACGCGGCTCGAGACAACAAGTACACCTACCAGGCGCACGTCAAGACGCACGCGAATCGTCCCCGTCCTCACAAATGCAATCAGTGTTCCAAAGCATTTTTGACGCAACAACATCTCACTCAACATGAAAAAACTCACTCGGGGGTTAAGGATTTCATCTGTAATATATGTAACAAGGCGTTCAGCACCCAACACAACCTGGAGGTCCATGGTGTGGTTCATTCCGGCAACAAGTCGTTTGTGTGCAGCGTCTGTTCCAAGGCCTTCGCCAGGAGAGCTGAGCTCAGGGACCACATGAGGACACACACCGGCGAACGTCCGTTCGGCTGCGAGATCTGCGGCGCGCGTTTCACGCAGCGCTCCAACCTGCACTCTCACCGCCGAGCCACGCACATGGACGACAAGCGACACGCCTGCACGCTCTGTCCCAAGAAGTTCAAGCGGCGCAGGTTGTTGGAATACCACATAAAGGCGTCTCACACAGGCGAGCGGCCACTCAAGTGCAAAGTGTGTGGTGCGTCCTTTGTGTACCCCGAGCATTACAAGAAACACATCCGGATACATAGTGGAGACAGACCCTATGATTGTGAGATCTGCGGCAAGTCGTTCAGCTCAGCGGACAACCGCAACACGCACCGGTTCGTGCACAGCGACAAGAAGCCCTACGAGTGCGTCGCGTGCGGCGCCGGGTACATGCGCAAGCAGCTGCTCTACGCGCACATGAACACCAGCGGTCATTTAGCAGAATCAATAGTGGTCAACCAACCAAGAGTTATCAAGGTCTCAGAAAATATATTTGAAACGAACGAATTGGATTCAAATGTCAAATCAGTCAGTTTTGTCAAAACAGAAGACTTAGAAGACACAAAATTTATCTGCAATATAATATCAGACGATAAGAAATTAATATTACAAGAATCTGATAAATCCACATTAAATCTTCTTCAAGAAAGTGAAGACCCCACTCTGCTGACAATACATAATTTGGGAGATAGAAGTCAGAATACGATTCTGGAAGCTGTCAGCGCGGAACAATTATCTGATCAAACTGAGATTGTTGCCAATGATGAAAACGGCGGAGTAGTTCGACTGATACAGATCAAGCTTCCTGACGGGAACAACGGATGGGTGGCACTTAACCGCTGA
- Protein Sequence
- MALNSCLICNSRVIKSLRNIYNIFEEHSSPIKDEASSASSVQSGKKLSEVVGNIVGISLEENKVHSNIICKKCYKSCMEYDILQTRLTNLKKEILDQFKNSISSNNLDYNNYQNSVISKNSIPVPSIQKQPTILGKKLVLPASKLLPIPPDFLLKVRKLPAFSKGNIVLPQIQTANASTLNLKVTVGTSVLTQTIKTTTTSSPAIKQTTNLLTSLTNDMEQLVTSQSHTSPKTSILNFNVNSLPNNFLSEAVLSRTDDEDNIGDSKSNGHERANDVQPMEIGGDYAISLVPVSAADSNNLVLEVEGVKSSSKASSEVAEFLNVEDLQSLDPTNEEHKYILGKLGILNGGEDEIDEDDEAHTIVVDGENGSILRMVSGQKFMYEGGEISLVMTEDDQQQDGDNELNQEQGDDSNDETAIELQMAGDEETANAIIAAAQEQGGALIKVESGEMYRVHSVEPRQASPHRPSPHQPSHHQLVAKHGDGFQCLLCQAKNEGEKPEVCGSAESMMRHLKRFHDARVYICKFCSAIMRKKVDYTTHIAEHAISMKGSGGTGEESGAGGASRPLSIAALLQEHTSQRVVQRPHSCPTCHKAFANKYTYQAHVKTHAARDNKYTYQAHVKTHANRPRPHKCNQCSKAFLTQQHLTQHEKTHSGVKDFICNICNKAFSTQHNLEVHGVVHSGNKSFVCSVCSKAFARRAELRDHMRTHTGERPFGCEICGARFTQRSNLHSHRRATHMDDKRHACTLCPKKFKRRRLLEYHIKASHTGERPLKCKVCGASFVYPEHYKKHIRIHSGDRPYDCEICGKSFSSADNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVIKVSENIFETNELDSNVKSVSFVKTEDLEDTKFICNIISDDKKLILQESDKSTLNLLQESEDPTLLTIHNLGDRSQNTILEAVSAEQLSDQTEIVANDENGGVVRLIQIKLPDGNNGWVALNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824096;
- 90% Identity
- -
- 80% Identity
- -