Pful023987.1
Basic Information
- Insect
- Phragmatobia fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_932526455.1
- Location
- CAKOBD010000137.1:2869174-2873257[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.039 3.5 9.0 3.1 1 23 60 82 60 82 0.93 2 23 3.2 2.9e+02 2.9 0.2 2 23 110 132 109 132 0.88 3 23 0.0086 0.76 11.1 0.6 2 23 153 175 152 175 0.96 4 23 0.00029 0.026 15.7 1.4 1 23 180 203 180 203 0.94 5 23 0.91 81 4.7 3.7 1 23 207 230 207 230 0.90 6 23 8.2 7.2e+02 1.7 0.5 3 23 234 255 233 255 0.93 7 23 0.0025 0.22 12.8 3.4 1 23 329 352 329 352 0.94 8 23 0.00022 0.02 16.1 0.8 1 23 425 448 425 448 0.97 9 23 0.0025 0.22 12.7 2.3 1 23 486 508 486 508 0.96 10 23 0.049 4.4 8.7 0.0 2 23 536 558 535 558 0.90 11 23 0.0093 0.83 10.9 2.6 1 23 578 601 578 601 0.96 12 23 5.6e-05 0.005 17.9 0.5 1 23 606 629 606 629 0.96 13 23 0.0011 0.097 13.9 1.1 1 23 634 657 634 657 0.96 14 23 9e-05 0.0079 17.3 0.8 2 23 660 682 660 682 0.97 15 23 1.5 1.3e+02 4.0 3.7 2 20 690 708 689 710 0.92 16 23 0.00053 0.047 14.9 2.3 1 23 762 785 762 785 0.96 17 23 2.3 2.1e+02 3.4 0.0 2 23 858 881 857 881 0.88 18 23 1.8e-05 0.0016 19.5 0.2 3 23 888 909 887 909 0.94 19 23 0.0031 0.28 12.4 4.2 2 23 914 936 913 936 0.94 20 23 6.3e-05 0.0056 17.8 3.4 1 23 941 964 941 964 0.97 21 23 1.1e-05 0.00094 20.2 4.9 1 23 968 991 968 991 0.97 22 23 0.00019 0.017 16.2 0.6 2 23 998 1019 997 1019 0.96 23 23 2.3e-05 0.002 19.2 1.3 1 23 1025 1047 1025 1047 0.97
Sequence Information
- Coding Sequence
- ATGAACTTGAAAACCTCCTTTGTACTAACTTTGATACTTGTGAAATACAATGGAGAAAATTTCTTTTCAGGTTCCGAAAGAGAGCCACCAAAGAAAAGTGATAATTATGTAAGGAGGAAGAACCTGCTTATTCTATTCAACAACACAACTTTGATACCTTTTAAATGGCGAGGCAAATATCTGTGCTTCTATTGTGGAAACGAATTCAGTAGTTATAAGCGACTCCGAAAGCATACGTATAACCACGGCCCCTGTTCCGACACAGATAAAGCCATACGACTCGTGAAATCGGTTGATTCAGAAATTAAAATTGATGTGTCATACATAAAATGCAAATTATGCTTCCAATCTTTTCTAGATCTGGATAGTATTGTCGACCATTTGATCTCAACACATGATTTATTCTATAACAAAGATGCTAAATTAACAATAACCACGTATAGACTTTTAGACTTGCAATGCTTACTTTGCGACGAACAATTTGACTATTTCCAAAAACTCGTCACTCACATGAACACTTCTCATCCTAACAACTCTTTCTTGTGTACGGAATGTGATCAAATTTTCAACAAAATGCGCGATTTGCGCACTCACATGAGAAATTACCACAAAAAAGAATATAAATGCGTCACTTGCAATGCAACGTTCAATACTCACGTAGCATTGAGATTTCATAGGCTACATTCTCATCCAGCTAGCTGTTACGTATGTTTTCAAAATTTCCCTTCAGTGATGAAGCGAATCAATCACATAAAAAATGACCATACTGGTGATCAAGTCGAATGTGGGCATTGTAAAGAACTTTTGCCAAATACAAACGCTATATTACGACACGGTTCCAAATGTACTGATAAAAATGATCCTGCTTTAGAAACTATCATAGTGGAGGATGAAGAAAAGAAGGTAGCAACAAAAGATCTCAGGAATAGCATCGCTACCATCATTAATATGTCCACTGCGATACCGTTTAAGTTTTTCATAAAATTCAGATGTTTCTATTGCTCCAAAGATTTTTCAAACTGCGACGGTTTAAAGGAACACACAGTCATGCAGCATCCTCAATGCAACGTAGGTGACAAGTGCATGAAGCTCCGCAACAGATATGACGGCAATAAAATAAAAATTGATATTGCATCTCTTTCTTGCAAACTGTGCTACGAACCATTGCTGGACCTAACCACTTTAATAGAACATTTGACGACAGAACATAAGGTTCAATTTAATAAGGCTGTCGAAAGTCACCTGCAGACATTCAAATTAATAAAGAATAACTATTCGTGTCCGCAATGTGACGAAGTTTTCAGATATTTCACAGTGCTTCTCAAACACATGAGTAAAAGTCACACAGATGAATTGCCAGGCCAGTACGAAGGCTGTACCTCTGAAAGGAGAAGGAAAAATCTGAAAATACTCTTTGATCACACTTCAATAATGCCTTTCAAATGGCGGGGCAAATACCTATGCTTCTATTGCGGCAAGAACTATACAGAATATCCAGAATTTAAAAAGCATACAAAATCTCACGGCTTATGTAATATTCAAGATTATTCCCTGAAGTTAATCAAGGGTAATAATATTGAAATTAAAATCGATGTTTCGGAAATCGTCTGCGATATATGTAGTGAAACATTCAATCGTTTTGAAGAAATCATCGATCATTTGATAGGTAAACATCAGTTGGAATACAACAAAAGCATTGATGTGCCCTTCCAGGAATATCGATTAGTTGATTTTAAGTGTCTTCATTGCGAAGAACGGTTTTCTTATTTCGGCTATTTAGTAACGCATGTTAATAATACGCATCCGCAAAACTGTTTTATTTGCGACGATTGTGGTGGTCGTTTTAATAAAAAGAGGGATTTAACAATTCATATACGGAATTATCACCGATTAGGAGGGTATGCATGTGAACTGTGCTTGCAAAGTTTTGACACTTATCAGTCTTTACGACGACATCAGAACAATACACATTACAGGCAATGCAAAAGTTGCGGATTAAAATTTGCATCTCTATCGCTTTTGCAGAAACATTTGAAATCTGAACATCCTCATGACGACGGTAATTTGAAGTGCCGTTATTGCTCTAAAGAGTGCCATTCATCTATAGGCTTAAAGCAGCACACAAGCAAATGTAAAGTGAAAATAATTTCACAAGCGGATACAGAATCTTTTCCAGAAGATAATATTGAACCGAGAAAGAAGCAAAATATACTGCAGATACGCCAAAACATACAATGTGTATTAAATATGTCGACGGCAGTTCCATTTAAGTTCTTTTCTAAATATTCTTGCTTTTACTGCTCAAAGAAATTCTATGATTTCGACGATTTACGACAGCATACGAGCGTTGAACATCCAGTATGTGACTTGAAACAAAAATGCATGAAGAAGTGTAAAGGGGAAAGAATAAACGTTAAGATTGATATCTCAGCTTTAGCTTGTAAAGTGTGTTGTCTTCCAGTTGTAGATTTAGAAGCATTAATAACGCATTTAATAGACGAACACAAAGCGAACTATGATAAGAACATAACCGGATGCCTTGAACCTTTTCGGATTATCAAAGATAATATACCTTGCCCAATATGTCCCGATAAAGTATTTAGATACTTCGGAATTCTATTACGTCACGTAAACGCCGAGCATAGTAACAATAACAGGATTTGTGACTTCTGCGGCAGAACGTTCAGGAATGCGGCTAATTTAAATGTTCATATAACATACTCGCATACAGGATCATGTGAATGCAATGTGTGTGGTATTAAATACAAAAACCAATGGTATCTATCTAGGCATCGGGCGAAATGCCATAATGCGAAGGATTATAAATGTCCGAAGTGCCCAGAGACTTTCAATTCGCAGTACCATAAACAGAAACATTTGATAAAAATGCATGATATAGGCCACAAGTGTGATTACTGCGATAAAATGTTCACCAGGAATTCTTTCATGAAGGATCATATTAGACGGACTCATTTAAAGGAGAAAAACGTAACTTGTTCTATTTGTAACGAGAAATTCTTTGATAACTATCTTTTAAGGATGCATATGGTTAAACATGAGGGGGATAGGAAGTTTTGTTGCTCCGTATGTGGCAAGGCATTCTTGAGGAGGAGTAATTTGGCTTCGCATATGGAAATGCATAAGAAGTATGGTCACGTTCAATTGCAAATTTGA
- Protein Sequence
- MNLKTSFVLTLILVKYNGENFFSGSEREPPKKSDNYVRRKNLLILFNNTTLIPFKWRGKYLCFYCGNEFSSYKRLRKHTYNHGPCSDTDKAIRLVKSVDSEIKIDVSYIKCKLCFQSFLDLDSIVDHLISTHDLFYNKDAKLTITTYRLLDLQCLLCDEQFDYFQKLVTHMNTSHPNNSFLCTECDQIFNKMRDLRTHMRNYHKKEYKCVTCNATFNTHVALRFHRLHSHPASCYVCFQNFPSVMKRINHIKNDHTGDQVECGHCKELLPNTNAILRHGSKCTDKNDPALETIIVEDEEKKVATKDLRNSIATIINMSTAIPFKFFIKFRCFYCSKDFSNCDGLKEHTVMQHPQCNVGDKCMKLRNRYDGNKIKIDIASLSCKLCYEPLLDLTTLIEHLTTEHKVQFNKAVESHLQTFKLIKNNYSCPQCDEVFRYFTVLLKHMSKSHTDELPGQYEGCTSERRRKNLKILFDHTSIMPFKWRGKYLCFYCGKNYTEYPEFKKHTKSHGLCNIQDYSLKLIKGNNIEIKIDVSEIVCDICSETFNRFEEIIDHLIGKHQLEYNKSIDVPFQEYRLVDFKCLHCEERFSYFGYLVTHVNNTHPQNCFICDDCGGRFNKKRDLTIHIRNYHRLGGYACELCLQSFDTYQSLRRHQNNTHYRQCKSCGLKFASLSLLQKHLKSEHPHDDGNLKCRYCSKECHSSIGLKQHTSKCKVKIISQADTESFPEDNIEPRKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFYDFDDLRQHTSVEHPVCDLKQKCMKKCKGERINVKIDISALACKVCCLPVVDLEALITHLIDEHKANYDKNITGCLEPFRIIKDNIPCPICPDKVFRYFGILLRHVNAEHSNNNRICDFCGRTFRNAANLNVHITYSHTGSCECNVCGIKYKNQWYLSRHRAKCHNAKDYKCPKCPETFNSQYHKQKHLIKMHDIGHKCDYCDKMFTRNSFMKDHIRRTHLKEKNVTCSICNEKFFDNYLLRMHMVKHEGDRKFCCSVCGKAFLRRSNLASHMEMHKKYGHVQLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -