Pful021184.1
Basic Information
- Insect
- Phragmatobia fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_932526455.1
- Location
- CAKOBD010000119.1:1411211-1420071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.022 1.9 9.8 0.9 1 23 146 167 146 167 0.97 2 13 0.00016 0.015 16.5 0.2 2 23 172 193 171 193 0.97 3 13 0.019 1.7 10.0 0.4 1 23 197 220 197 220 0.89 4 13 1.2e-05 0.001 20.1 1.3 2 23 239 260 238 260 0.97 5 13 2.8e-05 0.0025 18.9 0.3 1 23 265 287 265 287 0.93 6 13 6.1e-07 5.4e-05 24.1 1.8 1 23 293 315 293 315 0.98 7 13 6.6e-06 0.00058 20.9 5.1 1 23 321 343 321 343 0.99 8 13 2.2e-06 0.00019 22.4 0.4 1 23 349 371 349 371 0.98 9 13 2.4e-06 0.00021 22.3 3.9 1 23 377 399 377 399 0.99 10 13 1.1e-05 0.00097 20.2 0.5 1 23 405 427 405 427 0.97 11 13 3.6e-06 0.00032 21.7 4.9 1 23 433 455 433 455 0.97 12 13 4e-07 3.5e-05 24.7 1.1 1 23 461 483 461 483 0.98 13 13 0.00045 0.04 15.1 0.4 1 19 489 507 489 511 0.95
Sequence Information
- Coding Sequence
- ATGTCAGTTGGCTTACCACAGTTACTATACGTAACAGACATGGAGCAACACAGGTCCGCGGACCAGAGAGGGCGAGCCTCTATTTCCGATACAAAACAGTATGTCATTTATTTACCTACACATGACCCTAAAATCGGCGGCGATATCGGGACAGCGGTGGTGGGGATAGAATCGGCTACTAGGTCTCCAAAGAAGATGGCTTGCCACAAAAACTATGTGATGAGCGTACAAAAATTCTGCAACTTTTATATACATTCCGCATTACAGACTGAGAAAACTCAAGAGGAGTTTCAAAAACTCCTACAAAATGAAATAGAGACTGAACCACCAGAAATGACCCCCAAAACAGAGAATGATGATGATTATTGCATTGGTTTTGATGATATTAATACCAATCATGATTACCTTGAAACGGTAGACATTACAGAAAATAAATTTACTTGTACCAAATGTAATAAAATCTTAGAAGAGAAACAGTTGTTGAATCATATACAAATGCATGAATCACCGCTACAATGTGATGTTTGTAACAAACCATATCAAAATCAGGCAACTTTAGACAAACATTTAGCAACACATGACAAAGAGTTTTTATGTTTGGTCTGTAACCTGAACTTCCAAAATCAATCACAGTTACTAGAACACAATATTTCAAATCACCCTAACAACAAAATAAAAATAGTACTTGAAAAGAAGGCACAGGAAACACTACTACAATGCTCGGACTGTGACCTTACTTTTACAAATCAGAGATCTTTATCTGTGCACAAAAGGCAGCATAAAAATAAGGAGTTTATCTGTGACGCTTGTGGAAAAACATTCAGTGTGAAATATCTGTTGAGAAGACATGTGGTCTTGCATAGCAATGTCAAACCTTATAAATGTGAAAAATGTTCAAAAAGTTATACAAGGAAGGACCAGTTGGTGCAACACATGCTTTTACATAAAGATAGGAAACCTTATGAATGTTCATATTGTAAGAAAGGTTTCACACATCTGTGCAACTTAAAGGAGCATATTCGTATTCACACGGGAGAAAGTCCATACTCATGTTCCAAGTGTGGAAAGGGCTTAGCCAACAATTCTGGCTTAAGACAACATATGATGAGGCATACAGGGTTAAAGCCCTATACCTGTAAGATGTGTCTGAAGTCTTTTTGTACCAAAGGAGAATTGAAATCCCACATGATCACGCACACTGGTGAACATCCATACAAGTGTGAGGAGTGTGGTGCTGGTTTCACCAAACAGAACTCATTAAAGAAACACTCATTGATACATTCGGGGATAAAGCCTTTTGCTTGCGACACTTGTAGTAAGAGGTTTACATATAAAGATCATTTAAAACGTCACTACCGTATCCACACGGGCGAGAAGCCCTACCGCTGCAACTACTGCGATCGAGCCTTCTCGCAGAGCGAAGACCTCAGCAAGCACAATAGAGTTCACATCGGACACAATATATATCAGTGTACAATATGCGGCTTGCGGTTCAGACTCATGTCCGAACTTAAGAGCCACTTCCCCGTCCACTTTGCCGATGACAAAATGCAACCCCCAGAGCCTAAAGAAGATGTCATAATAACGGAAAAACCGTAA
- Protein Sequence
- MSVGLPQLLYVTDMEQHRSADQRGRASISDTKQYVIYLPTHDPKIGGDIGTAVVGIESATRSPKKMACHKNYVMSVQKFCNFYIHSALQTEKTQEEFQKLLQNEIETEPPEMTPKTENDDDYCIGFDDINTNHDYLETVDITENKFTCTKCNKILEEKQLLNHIQMHESPLQCDVCNKPYQNQATLDKHLATHDKEFLCLVCNLNFQNQSQLLEHNISNHPNNKIKIVLEKKAQETLLQCSDCDLTFTNQRSLSVHKRQHKNKEFICDACGKTFSVKYLLRRHVVLHSNVKPYKCEKCSKSYTRKDQLVQHMLLHKDRKPYECSYCKKGFTHLCNLKEHIRIHTGESPYSCSKCGKGLANNSGLRQHMMRHTGLKPYTCKMCLKSFCTKGELKSHMITHTGEHPYKCEECGAGFTKQNSLKKHSLIHSGIKPFACDTCSKRFTYKDHLKRHYRIHTGEKPYRCNYCDRAFSQSEDLSKHNRVHIGHNIYQCTICGLRFRLMSELKSHFPVHFADDKMQPPEPKEDVIITEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -