Pful023874.1
Basic Information
- Insect
- Phragmatobia fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_932526455.1
- Location
- CAKOBD010000137.1:1355820-1367924[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.21 19 6.7 0.8 1 21 65 85 65 86 0.95 2 25 0.015 1.4 10.3 0.5 2 23 158 179 157 179 0.97 3 25 0.0076 0.68 11.2 0.1 1 23 183 205 183 205 0.95 4 25 0.044 3.9 8.8 0.1 1 23 210 233 210 233 0.90 5 25 0.0026 0.23 12.7 2.6 1 23 239 262 239 262 0.97 6 25 0.00059 0.053 14.7 2.6 1 23 269 292 269 292 0.98 7 25 1.6e-05 0.0014 19.6 2.1 1 23 299 321 299 321 0.97 8 25 1.6e-07 1.4e-05 25.9 1.6 1 23 327 349 327 349 0.98 9 25 0.0013 0.12 13.6 0.4 1 23 454 476 454 477 0.95 10 25 0.026 2.3 9.5 1.6 1 23 547 569 547 569 0.99 11 25 7.4e-05 0.0065 17.6 0.6 1 23 573 595 573 595 0.98 12 25 4.5 4e+02 2.5 0.3 1 22 600 621 600 623 0.76 13 25 0.056 4.9 8.5 0.7 1 21 629 649 629 652 0.89 14 25 4.7e-05 0.0042 18.2 1.1 1 23 659 682 659 682 0.97 15 25 0.00047 0.042 15.0 5.1 1 23 689 711 689 711 0.98 16 25 0.0027 0.24 12.7 0.1 1 23 763 785 763 785 0.96 17 25 0.024 2.1 9.6 0.1 1 23 854 876 854 876 0.96 18 25 0.0014 0.12 13.6 0.8 1 23 944 966 944 966 0.97 19 25 0.0013 0.12 13.6 0.6 3 23 972 992 970 992 0.95 20 25 1.6 1.4e+02 3.9 0.5 1 23 1000 1023 1000 1023 0.91 21 25 0.061 5.4 8.4 3.0 1 23 1029 1052 1029 1052 0.95 22 25 0.09 8 7.8 1.0 1 23 1058 1081 1058 1081 0.96 23 25 0.00012 0.01 16.9 0.5 1 23 1087 1109 1087 1109 0.97 24 25 8.8e-07 7.8e-05 23.6 0.8 1 23 1115 1137 1115 1137 0.99 25 25 0.00016 0.014 16.5 7.0 1 23 1143 1165 1143 1166 0.96
Sequence Information
- Coding Sequence
- ATGAAAAGAGAAAGGCAACATGGAACCAGCACCAAAGCCGTTGTTAAATTAGAAGGTAATCAACTAGAAACGTTGTCCAAGCCGAAATATACGAGAAGCGCTAGATCTGAGGCCAGAATTATCACCAAGAAAAATGCCACTGCTATACTTGAGTGCTGGTCCCTTTGCCCCTTTAGATGGAAGAAGAACAGGTTCAAATGTGCTTTCTGTGAAGATAATTTCACTGAATGCTCTGAACTTAGAGACCACGTTAGGATATGTGCGACTCAACATACAGTCAAAGATATTTATAGCAAATACAAAGAAATTCCTTTGATTAATGTAGACATTACGGAAGCTATATGCTGTTATTGCTCAATGCCGGTTACCGAAGTGGCTGAAATGAGGACTCACGCTATGCAACACGGTTTCAACATAGATTTAAACCATCCAGATGGCGTGCTACCTTTCTCTTTAGACAAGCAATCGTGGAGGTGTGTCATTTGTACGGAAAAATTCAACAATTTTCTAAAACTGTATGAGCACATGAACGTTCATTACCAACATTATATTTGTGCTATATGCGGCAAAGGGTATATGACCGCACCCAGATTAAGAAAGCATTCGGAAGTCCACATTTCTGGATCGTTTCCTTGTAATGAATGTGGCAGGATCTTCATTATGCGAGCATCGAGAGACTCGCACAAAGCCACTGTACATGCTAAAGAACCCAGATATGAATGCCCGCATTGTAATATGCGTTTCATTGGTTATTACGATAGAATGAAGCATATGAAGAATACACACAGCGAGCAAGAAGTCTCTTACAAATGCTCACATTGCGATTTGTCATTCAAAACTAGCGGAAAACGTTCCATACACGTTAGATCAGTGCATTTTCCGCCGCAATTGGATTTTAGTTGTAACTTTTGTGAATGGCAGTTTAAAACGAATTATGAATTGAAGAGGCACATGGTACGACACACAGGAGAAAAGAATTTCCACTGCCCAATATGCGGCAAATCTTTTCCAAGAAATAGAGCGTTGACTACCCACTTAAAGACTCATCAGGATGTGAATTGTAAATGGAAAGGGTCTGTTTATAAGCAAAGGGTCCACAGGGTTTCTCAGTTGAGGAGTCATCCGGATTTGACGGATTTAGTTCCTAGTTCCGCTAATATATCGGAGGGGATAGGCGTTAAACGCGTTAGAAAGTTAAAGGAGAATGTTAGTGCACGTCAGCTGCGCAGGCGCCGAAGAGCGAACAACGAACTCCCTGAGGAATCAGAGAAAAGAATTTCTAAGACTATGATGCGGAGAAATGCTCTGATCCTTCTGGAATTTTCCACGGCTTGGGCTTTTAGATGGTTCCATAGCGCGTTTTATTGTGCTTACTGTGATGTTAAGTTCGTCGATGTACCACTTTTAAGAGCACATGTTAAGTCTCACCACTTACACGAAATACCAACTAAAAAAATTTTCTCAAAGCTAACGGAAAACAATATGGTTAAAGTTGATGTTGCGGAATTAGCTTGTAGATTATGTAGCAGACTTTTAAACGGTATTGATTCCTTGAAGGACCACTTACTCATACATGGTAAAACCTTAAACGTCAATTATAGCGACGGTGTTCTGCCATTTAAATTGGACGATGAAGTATATACTTGCCAAATTTGCTTCGATCAGTTTATAAGTTTCTCCAAAATGAACGAACATATGAACACGCATTATCAAAATTACATTTGTGACACTTGTGGCAAGGCTTTTGTTTCAAAACCGAGGTTTAGGAAACACGTCCAATCTCACGAAAAAGGTAATTTTCCTTGTGGAGATTGTGATGAGGTGCTTGAGACTAGAGCCGCTAGAATGTGTCATAGAATGAGGGTACATAGGAAAGGTGTGCGTTATGCATGTCCGAGGTGTCCAAACGTCTTCACGACATACCACAGTAGGGCCAGACATCTAGTAGATACTCATGGGCAGCAGAAGAAAGATTATTACTGCAATGTTTGTGATAAATCTTTTGAAACTAGTTCGAAACGCGCTAGCCATATACGTTTAACACATGCTAATACTGAGAATCGACATTACTGTACGCAATGTTCTTCTATTTTTAACACCAAATCAAAATTGTTGCGTCATATGAAAACGCATAGATCTAAGTGGGCGAGTAAAGAAGAAATCGGAAAAAAACCATTGGTTACGAACGTTTGGAAGAAAAAACGAAGACTAATTGAAGATAAACAGAATGCCGCTCTCATTATAAACAGTTCCAATGCAGTTTTATTTAGATTTCATAGAGGAAAGTTCATGTGCGCTTATTGCCCAGAAATATTTGCAAGTATAGTTGAGCTCAGAAGGCATTCAAAATTACACGACAATAATAAAATGCAGATCTTTGAAGAAAAACCTGCTGTTCAAAACTCCTTTCCTCTTAGAATTGATATTACGGACTTAGCATGGACCGTCGAACCCAAAGTAAAATGGCGGCCGAAGCGCAAGTTTAACGATCACAGAGATAATGCAGCAATCATACTTGAATATTCCAACGCTTGTCCGTTTCGATGGAAGAGGGGTGCGTTCACATGCGCCTACTGTCCCCTCTCCTTTGGAGATTTCAGTGGTATCCGAGACCACATTATCGATCATCCCAATAGAGTTGAAGCAATGCGATTTGCCCGCACCTTCGCTAATGTTAAAGTTGAAATTACGAACTTACAATGCGTACTATGTCTTGAACCTATGGACAAATTAGATGCTCTTGTCGATCATTTAATGTCTACCCACAATAAATCTATAAATAAGCATCTAGGATTAGGCACTACACCTTTTCTATTATCTGGCAAAGAATACAATTGTACTCTTTGTGATGAAAGTTTCGAACTCTTCTCAAAACTTAACACTCATTTGAATGAACATTATCCTAATAGTATATGCTTCTTGTGTGGCAAAGCGTTTTCTACTGTTCATAGATTGAAAGCTCATCTCGTTATTCACGAATCAGGCGAGACGGAACAATATAAATGTACTAGATGTTCTGATATTTTCGCCACTAAAGCGTTAAGGAATAGCCACGTGGTATCTTCCCACGGCAAGGAGTATAGATATAGATGTCCGTATTGTAACGATTGTTTTAAAAACTATGGTGATAGGGGTAAGCATTTGAAAGAATCTCACGGAAAGAAAATTGAATATCCATGTAACTTGTGCACAGCAGTTTTTGCAATGTGCAATCAAAGGACTAAACATATTCAACAAGTTCATATACGCCATAAGACGTTCTCTTGTGAATTTTGTCCTTATAAGTTTGTTACTGCAGCCCAGTTACGAAATCATTTAGTTAAACACGGTGGTGAAAGAAAATTTCAATGTGAAGTGTGTAAGAAATCATACGCTAGAGCTAAAACATTAAGAGAGCATATGCGAATACATAATAACGATAAAAGGTTTGTTTGCGAATATTGCACTAAAGCGTTTGTACAAAAATGTAGTTTACAAAGTCATATAAGACATCATCATAAGACACATCACATCCGAATGCTAAACCGTTAA
- Protein Sequence
- MKRERQHGTSTKAVVKLEGNQLETLSKPKYTRSARSEARIITKKNATAILECWSLCPFRWKKNRFKCAFCEDNFTECSELRDHVRICATQHTVKDIYSKYKEIPLINVDITEAICCYCSMPVTEVAEMRTHAMQHGFNIDLNHPDGVLPFSLDKQSWRCVICTEKFNNFLKLYEHMNVHYQHYICAICGKGYMTAPRLRKHSEVHISGSFPCNECGRIFIMRASRDSHKATVHAKEPRYECPHCNMRFIGYYDRMKHMKNTHSEQEVSYKCSHCDLSFKTSGKRSIHVRSVHFPPQLDFSCNFCEWQFKTNYELKRHMVRHTGEKNFHCPICGKSFPRNRALTTHLKTHQDVNCKWKGSVYKQRVHRVSQLRSHPDLTDLVPSSANISEGIGVKRVRKLKENVSARQLRRRRRANNELPEESEKRISKTMMRRNALILLEFSTAWAFRWFHSAFYCAYCDVKFVDVPLLRAHVKSHHLHEIPTKKIFSKLTENNMVKVDVAELACRLCSRLLNGIDSLKDHLLIHGKTLNVNYSDGVLPFKLDDEVYTCQICFDQFISFSKMNEHMNTHYQNYICDTCGKAFVSKPRFRKHVQSHEKGNFPCGDCDEVLETRAARMCHRMRVHRKGVRYACPRCPNVFTTYHSRARHLVDTHGQQKKDYYCNVCDKSFETSSKRASHIRLTHANTENRHYCTQCSSIFNTKSKLLRHMKTHRSKWASKEEIGKKPLVTNVWKKKRRLIEDKQNAALIINSSNAVLFRFHRGKFMCAYCPEIFASIVELRRHSKLHDNNKMQIFEEKPAVQNSFPLRIDITDLAWTVEPKVKWRPKRKFNDHRDNAAIILEYSNACPFRWKRGAFTCAYCPLSFGDFSGIRDHIIDHPNRVEAMRFARTFANVKVEITNLQCVLCLEPMDKLDALVDHLMSTHNKSINKHLGLGTTPFLLSGKEYNCTLCDESFELFSKLNTHLNEHYPNSICFLCGKAFSTVHRLKAHLVIHESGETEQYKCTRCSDIFATKALRNSHVVSSHGKEYRYRCPYCNDCFKNYGDRGKHLKESHGKKIEYPCNLCTAVFAMCNQRTKHIQQVHIRHKTFSCEFCPYKFVTAAQLRNHLVKHGGERKFQCEVCKKSYARAKTLREHMRIHNNDKRFVCEYCTKAFVQKCSLQSHIRHHHKTHHIRMLNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -