Basic Information

Gene Symbol
nfxl1
Assembly
GCA_944567605.1
Location
CALYMX010006804.1:57540-75393[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.16 1.1e+04 -0.6 0.7 4 10 199 205 198 207 0.94
2 17 1.1e-07 0.0074 19.1 16.7 1 19 213 230 213 230 0.99
3 17 2.9e-09 0.0002 24.1 14.0 1 18 265 282 265 283 0.97
4 17 1.7 1.2e+05 -3.9 1.0 6 10 308 312 307 312 0.88
5 17 3.3e-09 0.00023 23.9 11.5 1 19 318 336 318 336 0.98
6 17 7e-06 0.48 13.3 10.1 1 18 371 388 371 389 0.99
7 17 7e-05 4.8 10.1 17.1 1 18 423 440 423 441 0.94
8 17 7.2e-07 0.05 16.5 13.7 1 18 450 467 444 468 0.85
9 17 0.87 6e+04 -3.0 1.1 5 10 496 501 496 501 0.94
10 17 0.0049 3.4e+02 4.2 5.8 10 19 517 526 514 526 0.90
11 17 0.064 4.5e+03 0.7 4.8 4 12 538 546 536 546 0.89
12 17 2 1.4e+05 -7.2 4.5 14 18 574 578 574 578 0.86
13 17 2 1.4e+05 -4.2 1.4 10 12 605 607 603 609 0.51
14 17 1.5e-06 0.11 15.4 7.1 1 11 615 625 615 626 0.98
15 17 5e-05 3.5 10.6 20.3 4 19 657 672 655 672 0.93
16 17 9.8e-05 6.8 9.7 12.5 1 17 714 732 714 734 0.86
17 17 1.1 7.6e+04 -3.3 0.6 6 10 764 768 763 768 0.90

Sequence Information

Coding Sequence
ATGAGTAATTTGGGCGGGTTGAAGGGCAAGAATCCTTGGAACAAGAACCTGAAGGTTCAGTCGAACAGGAACCAAAATGCTGCGAAGCCCAAGCCAAACACGCAGGAGAAGTTCAAGGAGGCTCAGCAGAAGCACCAGGCTGCTTCGCAAAAATACACCAAAGATTACGAGTCGTCGGAGGAGGAAGAAGAGTTAGAAACCGAGAATGCTATAGTGAACATCTTGAAGAATTACAATGCGACGGGAGCTGACGGAAATCTTATTGGAAGAACCAAAGGCTATTTGGAAGAAGCTTTCCAATCCGGAGCTTGCACATGTCTCATTTGCATCTCATCCGTTAAGAGGAACGAAGGGATTTGGACTTGTTCGGAATGCTTCTGTTTCTTCCACCTGCTGTGCATCCAGCGCTGGTCCAAAGATTCCATCTACCAACAGAAGCAAGCACTTGAAGCTCCAATCATCACCCGCCAGATCAAGATGAAATGGGGCTGTCCGAAATGCCGACATGAATACTCTCCCAATGACATTCCCTCTGACTATTTATGCTTCTGCAAGAAAACCGTTAACCCTCCATTCCAACCCTTGATTATCCCGCACAGTTGCGGTGAAACCTGTTCGAAGCAACTGAAGCCGAACTGTGGACACAGCTGTTTGTTGCTTTGTCATCCTGGGCCGTGTCCACCTTGTCCAAAAACCATCGAAGTGGATTGTTACTGTGGGTCGCGGAAGAAGCTGCAAAGGTGTAGTAATAAGGAGTGGTCGTGTGGGGGAGACTGTGGGAAGAAATTGAGTTGCGGGAAGCATACGTGTATGCAAGGCTGTCACGCAGGGGATTGTCCGCCTTGTTTGAAGAAAAGTATACAGAAGTGTGTTTGTGGCAGTAGTCAGAAGTTACGAGACTGCGCCACACCAATTTGGCAGTGCGACAAGGTTTGTGTGAAGAGTTTGGAATGTGGGTTTCACAAGTGCAATGAGGTTTGTCATTTGGGGTCTTGTGGGCCGTGCAAGTTGGGTGAAACGCGGACTTGTCCGTGTGGAAAGTCTTGGTATCAATTGCCGTGCACTGAGGAGACTCCAACATGCGGAGACACTTGTGGCAAAGTCTTGGAATGCGGGATGCACATCTGCAATCAGAGATGTCACAAGGATAAATGTAGTCCATGTATTGAGACTGTGGAGAAATCTTGTCGATGTGGACTTCATATTAAAGAAGTCCAATGCAAGAAGCCGTATTTGTGCGAGACGAAATGCAAACAGATGAAGGATTGCAACAAACACCCGTGTAATAGAAAGTGTTGCGATGGAAATTGTCCACCGTGTGAAAAACCTTGTGGACGAACGTTGACCTGTCGAAAACATTCCTGCACTTCAGTCTGCCACCAAGGCCCTTGCTACCCGTGCAACCTTACAGAAACCGTGAAGTGTTTCTGTGGAACTACCTCCCTCATCGTGCCCTGCGGCAAGAAAAGGAAAACTAGACCACCAAAGTGTTCGAAACTCTGCAAGTTGACGACTGATTGTCATCATAAAACTGCTCTACCTCATAGATGTCATTTCGGGGAATGTCCAGCGTGTAAGCAGATTTGCAACAAGGTGCGGAAATTTTGTCCTCATCTTTGTCCCGCTGTTTGTCATTCGGCTGTTTTGTTGAAAATTGAGGCACAAAAGGCAACTACACCATGGGAACAAGAAGGTCCAAAAGTTGCCAAGAAAATGTTGCCTTGTCCCGACTGTGTTGTACCTGTACCAGTCACTTGCCTAGGTGCACATGAAACTGTCGATTGGCCATGTTATTTAGCCAAACCATCAAGTTGTCACAAACCTTGCAACCGAGAACTTATATGTGGAAACCACAAGTGTCAAAAACCTTGTCACTTAGTCGAAGATAGTCCAGACAAAATAAAGGCAGGACAGAATTGTGAAGAATGTGAATATGGTTGTACAAAGGAAAGACCAGAAGATTGTCCTCACGTTTGCCCGAAGCCTTGTCATCCAGGTCCTTGCCCGCCGTGCAAGCAAATGATAAGAATTACATGTCATTGCGCTCTAACACAACCGTACATCGTCTGCAAAGATTGGACAACAGGAGACAAAGATGCTTTACAAAGCTGTGGAAATCAATGTCCAAAATCGTTTCCTTGTGGGCATCAATGCAAATCGAACTGCCATTCGGGAGTCTGCCCAAACTCGGAACAATGCAAGAAGAAAATCAAAGTGTACTGTTCGTGTAAACGGGTCCGAAAGGAGTTTTCTTGTGAGGTCAACAGGAGAGGTCAAGCGATTGTTGCTTGTGATGAAGTTTGTGCGGAGAAGAAGCTTGAAGAGAAGAAAGTGAAGGATTTGCTGAATGAACGGAGGAAGAAGGAAGAGGAGGAGAGGAATCAAAGGGAGTTGGAGATCTTCGAGAAGAAGTTCCAAGGGAAGAAGCGGTACAAGGATCGGAAAGTGGTGGAGGAGAGTTGCGAGAGAGGATTTATGGAGAAATATTGGATTGCTGTGGTTGGAGTGTTTGTTGCTTTGGTCGGGAATTATCTAAACAAAGGGAGGGCAGTTGCGTGTGGAAGTAGAACCAAGCTGATCTCTATGAAGAAGCAACTTGAGAGCTTCGAAGACTGGCGTGTCTTCATCGCGGGTGCGATGGAACTACTGTCTCCGTTGCACCTTGTCGTGGAAGGGGCCGCCAGATCGACGATTGTGTGGTTCAGCAAGGATAGAATATGCAGAGGTAAAATAATCGGGAGCAGAGACCGGAACAGCCTCGCTGCTAAGATCCCCTGGCTGGAAGTACCAAAAGACGAAATGAGGTACATGCAATCGAAATATTTGCACAATTTAACCTCAGCAGGAACTATCGCAAAAAAAGAAGCCAAGCGGCCATCAAGGTCATTAGCTCATACGCTATCTAAGCTGCGAATATACAAAACGCTCAGAAGACCCATCGCGTGCTACTGCAGTGAAACCTGGATTATGTCAGAGAAAACAAAGAGCGCAGTAGACATCTTCGAGCGCAAAATGCTGCGGAGAACACTGGGACCGATCATGGATCGCAAGGTGACCGGTAGGAAGGCCAAGGTTGGACTGGAAAGGCGCGATGAGAAAAGATGCACACCAAATAGCGTGGAGGAGAACAGCGACGGACAGACTGGAATGGGGGACTAG
Protein Sequence
MSNLGGLKGKNPWNKNLKVQSNRNQNAAKPKPNTQEKFKEAQQKHQAASQKYTKDYESSEEEEELETENAIVNILKNYNATGADGNLIGRTKGYLEEAFQSGACTCLICISSVKRNEGIWTCSECFCFFHLLCIQRWSKDSIYQQKQALEAPIITRQIKMKWGCPKCRHEYSPNDIPSDYLCFCKKTVNPPFQPLIIPHSCGETCSKQLKPNCGHSCLLLCHPGPCPPCPKTIEVDCYCGSRKKLQRCSNKEWSCGGDCGKKLSCGKHTCMQGCHAGDCPPCLKKSIQKCVCGSSQKLRDCATPIWQCDKVCVKSLECGFHKCNEVCHLGSCGPCKLGETRTCPCGKSWYQLPCTEETPTCGDTCGKVLECGMHICNQRCHKDKCSPCIETVEKSCRCGLHIKEVQCKKPYLCETKCKQMKDCNKHPCNRKCCDGNCPPCEKPCGRTLTCRKHSCTSVCHQGPCYPCNLTETVKCFCGTTSLIVPCGKKRKTRPPKCSKLCKLTTDCHHKTALPHRCHFGECPACKQICNKVRKFCPHLCPAVCHSAVLLKIEAQKATTPWEQEGPKVAKKMLPCPDCVVPVPVTCLGAHETVDWPCYLAKPSSCHKPCNRELICGNHKCQKPCHLVEDSPDKIKAGQNCEECEYGCTKERPEDCPHVCPKPCHPGPCPPCKQMIRITCHCALTQPYIVCKDWTTGDKDALQSCGNQCPKSFPCGHQCKSNCHSGVCPNSEQCKKKIKVYCSCKRVRKEFSCEVNRRGQAIVACDEVCAEKKLEEKKVKDLLNERRKKEEEERNQRELEIFEKKFQGKKRYKDRKVVEESCERGFMEKYWIAVVGVFVALVGNYLNKGRAVACGSRTKLISMKKQLESFEDWRVFIAGAMELLSPLHLVVEGAARSTIVWFSKDRICRGKIIGSRDRNSLAAKIPWLEVPKDEMRYMQSKYLHNLTSAGTIAKKEAKRPSRSLAHTLSKLRIYKTLRRPIACYCSETWIMSEKTKSAVDIFERKMLRRTLGPIMDRKVTGRKAKVGLERRDEKRCTPNSVEENSDGQTGMGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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