Patr053584.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- stc
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000958.1:278844-282181[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 1.3e+05 -4.0 1.6 15 19 278 282 277 282 0.81 2 13 0.074 5.1e+03 0.5 0.5 4 10 311 317 310 321 0.96 3 13 3.3e-06 0.23 14.4 15.2 3 18 325 340 317 341 0.85 4 13 1.3e-07 0.0093 18.8 10.4 3 18 379 394 377 395 0.91 5 13 5.5e-10 3.8e-05 26.4 12.4 1 19 435 453 435 453 0.98 6 13 2.2e-05 1.6 11.7 12.6 4 19 500 515 493 515 0.87 7 13 1 7.2e+04 -3.2 2.2 5 10 544 549 544 549 0.93 8 13 2 1.4e+05 -6.6 14.7 1 11 555 565 555 577 0.88 9 13 9e-09 0.00062 22.6 14.8 1 19 582 600 582 600 0.98 10 13 2 1.4e+05 -4.1 1.3 6 10 629 633 628 633 0.76 11 13 0.00039 27 7.7 15.1 1 18 639 655 639 656 0.92 12 13 2.1e-09 0.00014 24.6 15.5 1 18 692 710 692 711 0.97 13 13 0.093 6.4e+03 0.2 16.5 3 17 722 736 721 740 0.91
Sequence Information
- Coding Sequence
- ATGTCCTACCAGGACCAATATTTTGATGGTCATTCACGGACCTATCAAAACTCCTCCCATCAAACCTCCTCGTCCCAAAACTTTCAAAGTGAGGACCAAAATCTACGTCAATTTCTGATCAACTCTCAGGGAACTTTCAATTCGAGCAACACACCCATAGATATAAGTAACTCTAATTTACAAGCAACTGCCGCTGAATTTACACCAAGTACCTCAACAAACCGAAGTGCCGGTGCTGTTAAGAAAAATCATAAAGTAGATAATAAGTTTAAACGAGAAAACCCGAAAAAATTTGTAAGAACTTTTGGAAGAAACAATGAAGATTTAAATGATGTTGAAAGTAATTTAAGTAGGGTAAAAGTTAATGAAGATAATGGACGGGATAACATAAGAAATTATGATAATAAAAATAGAGATATGAAGAAGAAATATAACAATGCAGATAAGTTTAAAGGAAATTATCGGGGAAATAATGGGTACTATAATAATAGTTTCTACAATAATCGGGATAATTATAGAAGGAATAACAGTGAAAGGAAAATGGATAATTGGAGAGAACAAAAAATTGATAAACCACCTACAGAAGAAGTTAAAATTGTTGAGAAAACTAGCAGTTCTAATCCACGTCAATTACAAAAGAAATTGGATGCCGCATCCCAGCGTGAACGTTTGGAGCAGATGATTTCACATAGAATCTTGGAATGTTTAGTCTGCTGTGAACGTTTACGCCATACTGATAAAATATGGTCTTGTAAACAGTGCTATCACATTTTACATTTAAATTGTGTGATTCGTTGGGCAAAAGCCTCCAAGTTAGAAGAAGGATGGCGATGTCCAGCTTGCCAAAATGTGTCCAATCAAGTCCCTAATGAGTATAGATGTTACTGTGATAAATTCAAAGATCCTAAATTAGAACCAGGTGGCCTACCTCACAGTTGTGGGGAAGTTTGTGGACGTAAAGGAAGAAGTTGTGAGCATACTTGCACATTGTTATGCCACCCAGGCCCTTGTCCAGATTGTAATATCACTGTTATTAGACCTTGTGGTTGTGGAGCCACAAAACCCTATGTAACATGCAGTTCTGATATTCAAATAGTTTGCTCAGGGCTTTGTAATAAGCCATTGAATTGTTTGATACACAAATGTGAGAAAACTTGTCATGTTGGACCTTGTGATGACTGTGAGGCATTTGTTAAACAAGAATGTTTTTGTGGAAAGGTTGGAAGGAAAGTTCGTTGCACAGCTGAAATGCAAGGAGTTGAAAAATATGAATGTGGTGAAGTTTGTGGCAAGGTTTTGAGTTGTGGGAATCACAAATGCAGCAAGTTGTGTCATGAAGGACCTTGTGAATTCTGTCCAGTTTCACCTGAGGTTATCAAAACTTGTCCTTGTGGAAAAACTGATTTAACAGAAGAAAGGAAATCGTGCCTAGATCCAATACCTTGCTGTGATAAGGTTTGTAATAAGAAATTGAAGTGTGGACAACCAAGTGATCCTCATTTATGCAAAGAAAAATGTCATTTTGGAGATTGTCCTACTTGTCCTTTAACTACTTTCGTCCGATGCAGATGTGGGCATATGGATAGAGAATTAGCTTGCAAAGAATTAACAACCAAAGCTGATGATGCTAGATGTCAAAAGAAATGTACTAAGAAACGATTATGCTGTAAGCATAAATGCAACCAGATGTGCTGTATTGAAGTGGAACATATTTGTCCTCTACCTTGTAACCGTTTGTTAACTTGTGGTCAACACAGGTGCGATCAAACCTGTCATAGAGGCCACTGTGCGCCTTGCTGGAGAACTAGCTTTGAGGAACTATATTGTGAATGTGGTGCAAGTGTATTATATCCACCAGTGGCTTGTGGAACTCGTCCACCTCCATGCAACAAACCATGTTCACGAGAACGACCATGTGGTCATGACCCAAACCACACATGTCACTCAGGACCTTGCCCACCCTGTGCAATCTTCACCAGTAAATACTGCCATGGTAAACATGAAATTCGTCAAACAATCCCTTGCTATCAGGAAGATTTTAGTTGTGGCCTGCCTTGCAATAAAGAATTGCCTTGTGGGCGCCACAAATGCATCCAAACATGCCACAAAGGTCCATGTCCATCACCCTGTAATCAACCATGTGTTGTTCCAAGAATTAATTGTGAACATAATTGCAATTTGCCTTGTCATGATCCGCCTTGTCCACCAACTCATTGTAAAAAGACGGTTGTTATTACTTGTCTGTGTGGCTTGAGAACTAGCACCAGGCCTTGTGTTGAAGTTATAGGGGAATACCAGAAAATTGCTATGACACAAATAGCAGCAAGAATGGCAGAAAGTGGACAAAGTGGAGAAACCATTGACATTACTGATATTATTAGTAAGAAAAAAGGAGGAACACACAAAATGCTTGAGTGTAATGAAGAATGTCGTATAGTAGAACGTAATAGACGTTTAGCGATTGGTCTACAAATCCGTAATCCTGACCTAAGCGCAAAACTAACGCCAAAATATTCCGAGTATATGAGAGGTTGGGCTAAGAAGGATTCCAGATTTTGTCAACATGTTCATGATAAACTCACTGAACTTGTTCAATTGGCTAAACAGAGCAAACAGAAAAGTCGCTCACACTCCTTTGAATGTATGAATAGAGATAAAAGGCACTTTGTTCATGAATATTGTGAACATTTTGGTGTAGAGAGTGCAGCTTATGATAAAGAACCTAATAGAAACATCATTGCTACAGCACAAAGAGAGAAGTCTTGGTTGCCAAGTTTGAGTTTGTTAGAGTTAATGCAAAGGGAAAGTGGTCAGCGAAAAGTCCCAGGACCAGTTTTGAATAAAGATTCTGGTAGAAGTGTTTTGGGTAGACCAGGTGAAGCAGTTTCTTGGAAACTGCAAAGTCGAGTAGTAGCAAGACCAGTCACTCCTCCTGGAGAATTTGTGGATTATTTTGATAATCCCTAG
- Protein Sequence
- MSYQDQYFDGHSRTYQNSSHQTSSSQNFQSEDQNLRQFLINSQGTFNSSNTPIDISNSNLQATAAEFTPSTSTNRSAGAVKKNHKVDNKFKRENPKKFVRTFGRNNEDLNDVESNLSRVKVNEDNGRDNIRNYDNKNRDMKKKYNNADKFKGNYRGNNGYYNNSFYNNRDNYRRNNSERKMDNWREQKIDKPPTEEVKIVEKTSSSNPRQLQKKLDAASQRERLEQMISHRILECLVCCERLRHTDKIWSCKQCYHILHLNCVIRWAKASKLEEGWRCPACQNVSNQVPNEYRCYCDKFKDPKLEPGGLPHSCGEVCGRKGRSCEHTCTLLCHPGPCPDCNITVIRPCGCGATKPYVTCSSDIQIVCSGLCNKPLNCLIHKCEKTCHVGPCDDCEAFVKQECFCGKVGRKVRCTAEMQGVEKYECGEVCGKVLSCGNHKCSKLCHEGPCEFCPVSPEVIKTCPCGKTDLTEERKSCLDPIPCCDKVCNKKLKCGQPSDPHLCKEKCHFGDCPTCPLTTFVRCRCGHMDRELACKELTTKADDARCQKKCTKKRLCCKHKCNQMCCIEVEHICPLPCNRLLTCGQHRCDQTCHRGHCAPCWRTSFEELYCECGASVLYPPVACGTRPPPCNKPCSRERPCGHDPNHTCHSGPCPPCAIFTSKYCHGKHEIRQTIPCYQEDFSCGLPCNKELPCGRHKCIQTCHKGPCPSPCNQPCVVPRINCEHNCNLPCHDPPCPPTHCKKTVVITCLCGLRTSTRPCVEVIGEYQKIAMTQIAARMAESGQSGETIDITDIISKKKGGTHKMLECNEECRIVERNRRLAIGLQIRNPDLSAKLTPKYSEYMRGWAKKDSRFCQHVHDKLTELVQLAKQSKQKSRSHSFECMNRDKRHFVHEYCEHFGVESAAYDKEPNRNIIATAQREKSWLPSLSLLELMQRESGQRKVPGPVLNKDSGRSVLGRPGEAVSWKLQSRVVARPVTPPGEFVDYFDNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -