Patr027668.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000441.1:326158-348689[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.017 5.4 10.5 0.3 1 21 262 282 262 283 0.94 2 18 0.0039 1.2 12.5 4.0 1 23 289 311 289 311 0.97 3 18 1.4 4.6e+02 4.4 1.1 1 21 498 518 498 519 0.95 4 18 0.34 1.1e+02 6.4 0.1 2 21 526 545 526 548 0.88 5 18 0.032 10 9.6 1.5 3 23 554 574 553 574 0.97 6 18 0.013 4 10.9 4.1 1 23 580 603 580 603 0.96 7 18 6.4e-06 0.002 21.3 1.9 1 23 608 630 608 630 0.98 8 18 0.0013 0.4 14.0 2.5 1 23 665 687 665 687 0.97 9 18 0.0063 2 11.8 3.7 1 23 720 742 720 742 0.98 10 18 8.5 2.7e+03 2.0 2.3 2 23 763 785 762 785 0.94 11 18 4.7 1.5e+03 2.8 2.7 1 23 792 815 792 815 0.89 12 18 0.049 16 9.0 0.7 2 23 818 840 817 840 0.95 13 18 0.0028 0.9 12.9 1.6 1 23 849 871 849 871 0.98 14 18 0.00021 0.067 16.5 0.3 2 23 890 911 889 911 0.97 15 18 1.2 3.7e+02 4.7 1.7 6 23 959 976 957 976 0.92 16 18 0.0021 0.66 13.4 0.4 2 23 1515 1537 1515 1537 0.94 17 18 6.6 2.1e+03 2.3 1.7 2 23 1557 1579 1556 1579 0.95 18 18 0.28 89 6.6 0.2 2 23 1584 1606 1583 1606 0.89
Sequence Information
- Coding Sequence
- ATGGCTAGCATAGCGGAGATAATGCAATTGTGCAGACTGTGTTTGGTGAAGGAACAAGTGAACGTACCAATTTTCGAGGAACAAGACGACGTTAGGCAAATTTTTGTGAAAATTGCTGCCTGTCTGCCGGTCAAGGTATCAAAAGAGGATAATTTGCCGAAGAAAATCTGCGACGGCTGCCTATATAAATTGGAACTTCTCTACCAATTTTCAAACACCACCACAAATGCGGAGAAACAACTGTTATCGTGGTTAAACGAAGCCGGCCTAGACACAGATAAGAACAGTACCAACAAAACAGACGATCCTATTCCTGTCGTATCAAAAATTACAACCAACTCAAAAACGGAACCAAATAATGTGGCGCAAGACTCCTTATCATTAGAGGCTAAAAGTTACATTCTGCAACAACAACAACTGCCTTATGAATCAGACGAGTTTCCCTTTCAAGATGATGACTTTGAAGAACAGCCACCAGCTGATGCACCTGCCGTTAGTAACACTGAGGATGTTGAACAACCACCACCTAAACGGCGAAGAACAGCTGCACCTACATTATTACAAGAACCACCGGATGAATCTGATGAAGATGCAGATTACGTTCCCATTGAAGAACCTGCAAAGACTGATGAAGGAAGTGAAGATGAAGCAATGGTTGAATCAAGTCTAATTGAAGTTCTTAATGAGGAAGAGCAGCCCGGTCCATCTGGTATAGGAAAAGCTGAAGCACAATATGAAGAAGTCATCGTTGAAACAGAACTCGAATCATCGTTAATGGCAAGCTATCAGTGCGAAGTCTGCTCGCAGATATTTGCGGATCGTAAAGAATTCTTAGAACATCACATGTCTCAATTCGGCTCTACGTTTTCGTGTTGCCGCTGTGACGAGTCATTTAAAAACAGTACTGAATTGTACCAACATTATGAATCCCATAAAAACGAGAATGAAATTATTATCTCCGGTACAAACTCTGATATAAATGAAGAGATCATTAAAGAGGAAGATGAAGAAGACGTCGATGTTTTACACTATAGCGAACATGTTGAAGCTGTTATGAATATACCAGGTTCAAACGCAATAGAAAGTACAAATGAATTACTTTATATATTAGATGATGCACAATGTGTGAATGAAGTTGTTATTGATGAAGCTGGTCAGGTGACAAAGCCGTCACAATCCGCAAATATAAAATCGGAAAATTTCACCATTGTCCAAGTGGATCATGGTTATATAATCCCCAGTGTTTTTAAAGGCCAATTGGAGCCAAAGCGTCGTTATAAAAAACGCGAATCAACAGAAATGTTTGTAGAAGATGAAGATACAAAAGCTACAAACACGTTAGTAAAAATGGAACCTTCCACAAGCAAAAACTCGACATATACACCGCCAAAATTAAAAATGCAGCCCCAGAAACGAAGGCATGAAGTACCTGATTTTTCAGCAACGACTTATCAACTTTTAAATCCCACTGAGGAAGTTGACATGCCTCACTACAAATGTCTTCGCTGTGAACAATTATTTATAAACAAATTCGTTTTCTTCAGACACATAGAGAAAGGGAAGTGTTACGTAAACAGTTGCGACGTTTGTACTGCAGTCTTCGATAAAAACAGTGATTTTTATGAGCATTACGTTGCAGAGCACACGGAAAGAGCTATTTGCAATTTTTGTTTTAGGACATTTATGTACGAGAAGAATGTTAAAGAACACATGTTGAGGCATTTAGATCAGTTTAGACATCGCTGCGAAGAATGCAATAAAGGTTTTTATACAGTTCGCGAGTACAGAAATCATTATAAAAACAGGCATATGGGAATTAGACATAAATGTGATGAGTGCGGAAGATCTTTTGCAGACGAATATTATTTTAAACGGCATTTAGCCACGCATGGTAGTTTGAAGAAATTGGATACCAAGAAATACACTTTGGTGAAGTCTAGAGCTTTAGTCGATGTAGATGTAGATAATGTTATAGATAGTCCTAGAACAAGATATAAATGTGAGATTTGTGGCATGCGCTTTCAACATTATTCGTTATTCAACTCTCATCGAGCTCTCCATAAATATTCGGAAAGTGACTCGACAGATTTTTATTGCGATGAAACTTCTTCCTCTTCTAGCAGCAGCGACGAAGAAACATTCGAAGAAAGTAAAACTTACGTCTGCAAATTTTGTAATGCTACTTTTAAGAATTCTCATGCATATGCCGGCCACCACAGAATACATAAATTAGCAAAATCGGCACCAGAAGATCTTCAGTACGAAGAAACAATGAAAACTAAAAAGAAATGTACATTCTGCACACATGTATCAGATTCTGAAACGGATTTATCCACGCATTTTATAAAAGTTCATGAAACTGATACTAACGGATTTTCTTGTGAAATATGTTTCATTGATTTTCACAAGTTTAATAATCTACTGCAACATAATTCATTAAAACACTCGTTAATCTGCAATGTTTGTAACATAAAATTTAAATCATTTCTAACTTTATCTACGCATAGATTAATGTTACATTCTCCAGCAAATCCAGCTACTACCTACTCCTGTACAAAATGCTCCGTTAAATTTGATGATATGTACAAGTTAAAGTTACACATGAAAGCTCATGCAAAGAGCGAAGAAAAAAATGCGAGAAATATGAAGGATGAGAAGGACATAGTTAAATGTGATTTTTGTTCAAAAGGATTTGAAGATTCCGAAGAACTTAAGATTCATTTATCAACACATTTTTCTATAGTTAAAATAATTAATAGTGATAAAACTGAAGTATCGCAGAAATCACTAGAAGAGAATGTTCAGGAGAAAGATGTAATTAAAGCTCCCTCTAAGGACGGTATTCAAGGAAATCCGAATTCTCCAATGCTAAATTGTTGCAAGAAATATCGCACCAAAAGAGAATTAAATGTTCATCTTAAACAACATATTACACAGCAAACAGTATCAAATAAACCATTGCAAATTAAAACTGTGAAAAATATTGCTCCAGCAATGACCAAACCAGCTCCACACACCTCAGAAGCTTTGAAAGCACCCATGCCAATACCAGTTTCTTCTGCAACTGCTTTAGCATTTCCAGTTCATTCAGCAATGCCCGTACAAAAAATTACGGATGGTTCTTTGCCTGTGTCTACTACAAACGAGCCTGTTCCTATAAATCAAAACCAAGCAAAAGTTCTATTTCTGGATAATAATCGCTATATAATTCTTCCACAGGGTGTAACTCCAATTTCAAATGGGGGCGTTATAAAAATTCATCAAGCACAATCAGTTGAGGGGATATACCCAAACAATCAAAATTATAATATTGTGCCCCAGCCTATGAACAATATCTTGCAACAACTTGTTAGTCAAACCATTGCTCTACCGAATAACAACGTGAACTCTCAAATTAACATTACACCCCAAACTAACAATACAACAAATGTTTCGCAGGTAAATACAAATCCTCAAGAACAGGTAAAACCAAAGAAAACAGCGATAGATTTTAATGAGCCTTTGAAAAAATGGATGATTTCTAAGAAAAAAAAGGTAAACATTTTAAAACATTCTTCAAGTTATGTCATGTCACTTCCACATAAAATATCGCAGAATTTTAAAAAGGATGACAATTCCATTAATACAAGTTCAGAAAAATGTGTGCTTATGCCAACCACTCTACCAAACATTAGTCCAAAACTTCTCCAAGAAAATAATCAGTCATCTTCCTCAACTAAGGAAAGTACAGTATCTTTTCCAAAGAAGAACAGTCCAACAGAACAAGTTATTCTGAATGGTGCAAGTAATGTTAATTCCGTTAATAGGAGTACCATTATAGTATATGGAAATCCAGATAATGATAAGCAAAAAGAACTTAATTCAAGTCTAAATAATTGCTCTGAAAGCAATATAGCTGCAAATCCAACAACTACTGGTGAATTATCTGATAAAAATGATAATATTTCTACCGAAAATTTTAAACCAAAAATATTTTTGAAGCCATTAAGTCAATTACTACAAAAAACATATGAAAACCAGCTTACAGAAACAACTTCTGCATCTACATCAACATCTAATTCTGAAGAATTTGTGGTTTTATCTTCCACTTCACAATCTAAACCTGAAGAAATGGTGCTTTTACCGTCTACTTCAAAGACAGACACAGAGTTTAAAGAGCATTCATACACGACGTACAAATCATTAAATAATTTATTAGAAGAAACGGTTGAAAATAAGGAAGAAACAACTGCATCAAAATCTGAAACTGATGAATATTTGGTTTTATCTGAAGCTACAAAACCTGAAACTGATGAATTTTTTGTTGTACCATCTACTTCAAAGGCAGATGACACACAGTTAAAAGAGCTTTCGAGTAAGGACAAACAACCACAAACATATTCCAGGACATATAAGTGTAATATGTGTAATGTCTTTTCTAAAAAAAGCCCATTGAGGTTACGAAGACACCAATCCAAATTCAAATGTAAAGTTTGTGAATATACTTCTTGCAAAGTAAAATTGATGGATCAACATTATGAAAAGATACATGAATATAAAAATCGTTGTGCTTCGTGTGATAAACAGTTTCCGACGCCCACTGATCTACAAAACCACAAGAAAGAAGTTCATTTCTGTATAAAATGCAAGAAATGTTTCTTAGACCTTAATAAACACAAACAGACTATCAAATGTTTGCATTGCGCTTTTAAAGCGTGTAATGCCCAAAACTTGGATATACATTACAAAGTAGTCCATGCAATCACTACAAGATGTACACCATGTAACACAGTATTTTACAGTCCTGAAAGTTTCGTTAAACATAAAGAGGAAATTCATTACTGCAGCAAGTGTAAAACATACAAAATGGATCTTAATATCCACCAGTCCTTTTGTAAAGGAGAAAGTCCTGATAATAAAACTGATGAAATTGAACACATCATTGAACTTGACAGTGATTAA
- Protein Sequence
- MASIAEIMQLCRLCLVKEQVNVPIFEEQDDVRQIFVKIAACLPVKVSKEDNLPKKICDGCLYKLELLYQFSNTTTNAEKQLLSWLNEAGLDTDKNSTNKTDDPIPVVSKITTNSKTEPNNVAQDSLSLEAKSYILQQQQLPYESDEFPFQDDDFEEQPPADAPAVSNTEDVEQPPPKRRRTAAPTLLQEPPDESDEDADYVPIEEPAKTDEGSEDEAMVESSLIEVLNEEEQPGPSGIGKAEAQYEEVIVETELESSLMASYQCEVCSQIFADRKEFLEHHMSQFGSTFSCCRCDESFKNSTELYQHYESHKNENEIIISGTNSDINEEIIKEEDEEDVDVLHYSEHVEAVMNIPGSNAIESTNELLYILDDAQCVNEVVIDEAGQVTKPSQSANIKSENFTIVQVDHGYIIPSVFKGQLEPKRRYKKRESTEMFVEDEDTKATNTLVKMEPSTSKNSTYTPPKLKMQPQKRRHEVPDFSATTYQLLNPTEEVDMPHYKCLRCEQLFINKFVFFRHIEKGKCYVNSCDVCTAVFDKNSDFYEHYVAEHTERAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEECNKGFYTVREYRNHYKNRHMGIRHKCDECGRSFADEYYFKRHLATHGSLKKLDTKKYTLVKSRALVDVDVDNVIDSPRTRYKCEICGMRFQHYSLFNSHRALHKYSESDSTDFYCDETSSSSSSSDEETFEESKTYVCKFCNATFKNSHAYAGHHRIHKLAKSAPEDLQYEETMKTKKKCTFCTHVSDSETDLSTHFIKVHETDTNGFSCEICFIDFHKFNNLLQHNSLKHSLICNVCNIKFKSFLTLSTHRLMLHSPANPATTYSCTKCSVKFDDMYKLKLHMKAHAKSEEKNARNMKDEKDIVKCDFCSKGFEDSEELKIHLSTHFSIVKIINSDKTEVSQKSLEENVQEKDVIKAPSKDGIQGNPNSPMLNCCKKYRTKRELNVHLKQHITQQTVSNKPLQIKTVKNIAPAMTKPAPHTSEALKAPMPIPVSSATALAFPVHSAMPVQKITDGSLPVSTTNEPVPINQNQAKVLFLDNNRYIILPQGVTPISNGGVIKIHQAQSVEGIYPNNQNYNIVPQPMNNILQQLVSQTIALPNNNVNSQINITPQTNNTTNVSQVNTNPQEQVKPKKTAIDFNEPLKKWMISKKKKVNILKHSSSYVMSLPHKISQNFKKDDNSINTSSEKCVLMPTTLPNISPKLLQENNQSSSSTKESTVSFPKKNSPTEQVILNGASNVNSVNRSTIIVYGNPDNDKQKELNSSLNNCSESNIAANPTTTGELSDKNDNISTENFKPKIFLKPLSQLLQKTYENQLTETTSASTSTSNSEEFVVLSSTSQSKPEEMVLLPSTSKTDTEFKEHSYTTYKSLNNLLEETVENKEETTASKSETDEYLVLSEATKPETDEFFVVPSTSKADDTQLKELSSKDKQPQTYSRTYKCNMCNVFSKKSPLRLRRHQSKFKCKVCEYTSCKVKLMDQHYEKIHEYKNRCASCDKQFPTPTDLQNHKKEVHFCIKCKKCFLDLNKHKQTIKCLHCAFKACNAQNLDIHYKVVHAITTRCTPCNTVFYSPESFVKHKEEIHYCSKCKTYKMDLNIHQSFCKGESPDNKTDEIEHIIELDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -