Patr022088.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000344.1:489814-498026[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0031 0.99 12.8 0.3 1 23 82 105 82 105 0.96 2 16 7.1 2.3e+03 2.2 0.1 3 23 110 131 109 131 0.92 3 16 7 2.2e+03 2.2 1.0 2 23 158 180 157 180 0.91 4 16 0.07 22 8.5 0.0 2 23 288 310 287 310 0.90 5 16 0.02 6.4 10.3 0.6 2 19 565 582 564 585 0.93 6 16 0.0007 0.22 14.8 2.9 1 23 600 623 600 623 0.96 7 16 0.41 1.3e+02 6.1 1.6 3 23 631 654 630 654 0.90 8 16 0.00011 0.034 17.4 0.2 1 21 666 686 666 687 0.96 9 16 0.22 70 7.0 6.2 1 23 692 715 692 715 0.90 10 16 5.5e-06 0.0018 21.4 4.3 1 23 721 743 721 743 0.99 11 16 9.5e-06 0.003 20.7 0.5 2 23 749 770 749 770 0.97 12 16 4.4e-07 0.00014 24.9 3.8 2 23 776 797 776 797 0.97 13 16 0.01 3.3 11.2 3.4 1 23 803 825 803 825 0.92 14 16 0.24 78 6.8 0.8 6 21 833 848 831 849 0.91 15 16 0.0011 0.36 14.2 3.0 1 23 858 880 858 880 0.96 16 16 0.056 18 8.9 1.8 1 23 891 914 891 914 0.97
Sequence Information
- Coding Sequence
- ATGTCACCTTCACTAGAAATCCAGGATTCTTCCCCGACGATAAACACCAAGAGGAAAGGAAAATCTGTGAAAAGTTTCATCAACAGCTCGATGGAAACTCGCAAAAAAATCCGTGCCGCGTCACCATCCTCCTCGAAACATTCTCTCAGTGACGTCACTATAATCGTCCGTGCCTCTAGCCTACTCAAAGACGAAGAAGCCATGCAAAACTCTCTAAACATGAGCACGTCTCAGGGCCCCAATTTTAATTGCCCCTACTGCGACACTAACTTTTACTCCGGGATTAAACTCAAGATCCACCTGTTAATGGAACATATGGTCGCGAATTGTATGATTTGCGATTTGTTGTTTGTGAATGAAGAACAGAGGGCTGCGCACGAGAGTAAAGTTCACAACGCAAATGTTTGCGAGATTTGTCACGGACGTTTTGACGAAATCGAGGAACATTACAAGAAAGTACATGACGCCGTAGTTTGCAATTATTGCAATGTCCTGCTACATCCTTCCGAACATTACTTCAAGCATATTATTGAAAGTCACTGTGTCAAGGAGGAGTTCGTTAAAACCGAGAATTTAGAAGATATCGTGGAGAGCCGGCGGGAATTCTTGGCTTTTTTTTGCAAACTTTGCGAAAAATATAGACCCCGCGAAATGCTAGGACACTATAGCTACTACCACAGAATCAATATTTATTATTTAGCAAAAGTCTTCAAGAAAAAAGGTTTGGATTTGAAACTGTCCAACCTCGAAGTCGACGACAATCCGAAAATAAAAAACAAAATTTCTTGTAAGGTTTGTTCCGCCGTTTACACAGAGCAAGTTCCTAAATGCTTCCACAAAGTCTTCTGCGAAGGATACACGTCGTGTCCTTACTGTACTGAAGTTTTCGAAATTCCCGAAGCCCTGGATAAACATGTAACTGAAGTCCACAAACAACAAAGCATGTTAGAAACGTGTCAATTATGCGAAGAAACTCACACGGAAGAGCACTTGATATCCCATAACGCTGCACAACTAAAACCTTACTTATTAGAATCGGATTTTTCGTGTGCGCTTTGTTCCTTAGCTCTTGGTAACGTTGAAGAAATCATCAAACATTTCAAGAATGAACATTTAGTTTCGACCATAAAAATCTTGAATTTACTTGGGTCAAGACCACCTTCAGAATCCTCGGATTCCGACTCTGATTCAGATTCGCAGAGCAACACCGAAGTCGAATACAGGAAAGTCTTTAATCCGACTTACGTAAAACTTTATTTCGATCCAAAAACAACGTTGTCGCTTGAGGAAAATGCGATCTCTTGCGAATTTTGTTTTGAAAATCTGCCAAATAAACTTAAACTGTTGGGTCATTACTACGACGAACATAATTTCAAAATCCCGGAAGGTGTCTCCGAATGTTCACATTGTAGTGTTGAAGCTGAGGATTTTTCTATGGAAACTCATTTGGAACATTTCTTTCAAGAACAAAGTACTAAGAGGTTCGAGTGCATTAAGTGTTGTTTTAAAATCGGAGGTGAGGAAGCGAGGAAACATATATTGGACGATCACGGGGATTCCTTAGATGCATTCAGTAAGGAGGAGTGGGGTTTAAGGTGTGGGTTTTGCATGGAAAGTTTTTGGGAAGAAGAAGAGGTGGAGCGACATGAAACTGAAAATCATTTAGACGAAGAAAGTAAACACGTTTTGTTGAAATGTTTTAGATGTGAAACGACGTTTAACAATTTGACGAGTTTACAAAAACATGCGGATTCACTCGAAGTCGATTCAGATTGTAAATCGTTTTTAGAATTCGCTTACCATTGTACCATTTGCAATCGGACGTTTCCATCCCAAACGTTTCTCCGCGATCATTTCCTAACAATCCATCCAAGACTCACCGTTGTCTTTTGTCCGAATGTGAATTGCAAAAGGTCGTTCACGACTAGTTTCTATGCGAAATCGCATTTCACGTCCATGCACGACAACCAAACTCGCCGGATGGAACCGAGCACCTACGAATGCGACGAATGCGGCAAGAGCTTCGCTAACAGAAAACCGTATCTTTCGCACATGAAGAATTCACAACGAGGCTTCAAGTGTGTGCTGTGCGGAGAAAAGTTCCATAGGCGAGAATTCAGAAAACATCATTATCAAACGGTCCATCCGGAGGAATTACGATACCAGTGCACTAAATGTGAAAAGTCTTTTGCGACCAGGTCCGCACTGCATAACCATTATAAAACACACAGCGAAGTTTTCAACGTGTGTTCCTACTGTGGTAAAGAATTTTCCCGTCGAGACTCCTACAAGGAACACCTCTTGATCCACATCGGTCCGAAAAACAGATGCCCGCACTGTCCAAAGTTCTTCACGCAGAAATCGAACTTGCGCCGTCACGTACGCCTGCACACCGGTGAAAAACCGTACAGTTGTCCCCACTGTACCAAAAGGTTCAGCGACAAGGGCGCCTGTAACTCGCACGTTTCCGCCCACGCCTACGAGGCGGAGTGCTTCTGCGGCAGGAAGTTCAGCAGCCAGGAGAAACTTGAGGGACACAAGAAAAGATGCACAGGAAAAGGACAGGTGGTTCACAATTGTGGTACTTGCAATGAGAGTTTCACGAATCGAAAAGTCTTGAGGAAACATGAGATGACGCATAAGACGAATTATCGGGTTGGAAAATCTAATTATCAGTGTTTGCTGTGCAAAACGTATTTTTCTCTCCGCTCTACAATTTCCCGCCACTTGAAGAATATTCACAAAATTCCACCCAATGAATACTCGAAACAAATCCGACGTTTAGAAAAATCCCACAAAATCGACAACAACGAAGAAGACGAGAATAAAGACGACAGCGACGAGGAAAGCGATGGAAATAAAGAAGCGTTTTTGTACCCACAGGATCTTGAGGCGCAAACTAAATCGATAGAATTTATTAAAACGGAGGTTTTGGATCAGACAATCGAAGATGCTGAAGAACTCGAAAGCACGTGGGAAATGAACGGTAGAGTGCGTGACTGGACACAGGATCTTGAATCACAAACTCAACCGAAGAACATTAAAACTGAAGTTTTAGATGACACAAATGAAGAAGAACTCGAAGGAGAACAGGAAATAACGAGGAGATTGCGTGGCCGGACACATAATCTTGAGTCACAAACTGAACCGAAGAACATTGTTAAAACCGAAGTTTTAGATGACAAAAATGAAGAAGAACTCGAAGGCGAACAGGAAATAACGAGGAAATTGCGCCGCTGGACACAGGATCTCGAGTCACAAACTAAACCGACGGATTTTATTAAAACTGAAGTTGACACAAATGAAGAAGAACTCGAAGGCGAACAGGAAATAACACACAGGACACAGGACCTCGAGTCACAAAGTGATGAACCGAAAAACATTGTTAAAACTGAAGTGGTAGATGATACAAACGAAAACGACAAAGAAGAACTCGAAGGCAGACAGGAAATGACGAGGAGATTGCATCGCCGTACACAGGATCTTGAGTCACAAATTCAAGTGGACTTTGTTGAAACAAAAGATGTAGATGGCACAAATAGAAAGAATGAAGAAGTCGGTAAACCGAAAGAGATGAGAAGATTGCGTCGCCGGACCCATCTTGAGTCGCAGACTAAACAGATTTTATCTACTAAAAGCGAAGTTTTGGATGAGAGAAACGAAGAGGATGTAGAAGAAATTGAAAGCAAAAAAGATGTGACGAGGAGATTGCGCCGCCGGACACAGTATCAGAAGTAG
- Protein Sequence
- MSPSLEIQDSSPTINTKRKGKSVKSFINSSMETRKKIRAASPSSSKHSLSDVTIIVRASSLLKDEEAMQNSLNMSTSQGPNFNCPYCDTNFYSGIKLKIHLLMEHMVANCMICDLLFVNEEQRAAHESKVHNANVCEICHGRFDEIEEHYKKVHDAVVCNYCNVLLHPSEHYFKHIIESHCVKEEFVKTENLEDIVESRREFLAFFCKLCEKYRPREMLGHYSYYHRINIYYLAKVFKKKGLDLKLSNLEVDDNPKIKNKISCKVCSAVYTEQVPKCFHKVFCEGYTSCPYCTEVFEIPEALDKHVTEVHKQQSMLETCQLCEETHTEEHLISHNAAQLKPYLLESDFSCALCSLALGNVEEIIKHFKNEHLVSTIKILNLLGSRPPSESSDSDSDSDSQSNTEVEYRKVFNPTYVKLYFDPKTTLSLEENAISCEFCFENLPNKLKLLGHYYDEHNFKIPEGVSECSHCSVEAEDFSMETHLEHFFQEQSTKRFECIKCCFKIGGEEARKHILDDHGDSLDAFSKEEWGLRCGFCMESFWEEEEVERHETENHLDEESKHVLLKCFRCETTFNNLTSLQKHADSLEVDSDCKSFLEFAYHCTICNRTFPSQTFLRDHFLTIHPRLTVVFCPNVNCKRSFTTSFYAKSHFTSMHDNQTRRMEPSTYECDECGKSFANRKPYLSHMKNSQRGFKCVLCGEKFHRREFRKHHYQTVHPEELRYQCTKCEKSFATRSALHNHYKTHSEVFNVCSYCGKEFSRRDSYKEHLLIHIGPKNRCPHCPKFFTQKSNLRRHVRLHTGEKPYSCPHCTKRFSDKGACNSHVSAHAYEAECFCGRKFSSQEKLEGHKKRCTGKGQVVHNCGTCNESFTNRKVLRKHEMTHKTNYRVGKSNYQCLLCKTYFSLRSTISRHLKNIHKIPPNEYSKQIRRLEKSHKIDNNEEDENKDDSDEESDGNKEAFLYPQDLEAQTKSIEFIKTEVLDQTIEDAEELESTWEMNGRVRDWTQDLESQTQPKNIKTEVLDDTNEEELEGEQEITRRLRGRTHNLESQTEPKNIVKTEVLDDKNEEELEGEQEITRKLRRWTQDLESQTKPTDFIKTEVDTNEEELEGEQEITHRTQDLESQSDEPKNIVKTEVVDDTNENDKEELEGRQEMTRRLHRRTQDLESQIQVDFVETKDVDGTNRKNEEVGKPKEMRRLRRRTHLESQTKQILSTKSEVLDERNEEDVEEIESKKDVTRRLRRRTQYQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -