Patr097751.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- Prdm4
- Assembly
- GCA_944567605.1
- Location
- CALYMX010002429.1:99939-113140[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00044 0.14 15.5 1.5 3 23 237 258 236 258 0.93 2 12 0.0049 1.6 12.2 1.3 1 23 356 378 356 378 0.96 3 12 0.015 4.8 10.6 2.6 1 21 382 402 382 403 0.94 4 12 8.7e-05 0.028 17.7 1.4 2 23 408 430 407 430 0.96 5 12 0.004 1.3 12.5 2.4 1 20 434 454 434 456 0.93 6 12 6.1e-06 0.0019 21.3 3.1 3 23 464 484 462 484 0.96 7 12 0.00052 0.17 15.2 2.8 3 23 499 519 497 519 0.96 8 12 0.00024 0.077 16.3 3.0 1 23 524 546 524 546 0.98 9 12 9.4e-06 0.003 20.7 0.5 1 23 552 574 552 574 0.98 10 12 0.0034 1.1 12.7 6.5 1 23 580 603 580 603 0.97 11 12 0.0081 2.6 11.5 0.6 2 23 606 627 605 627 0.95 12 12 0.0013 0.4 14.0 2.0 1 23 632 655 632 655 0.98
Sequence Information
- Coding Sequence
- ATGGTCCTAGATCCAGAACCTGAAGATGAAATCAAGTCTCTATGCGGAATTTGTGGCAGAGCCCACAAATGTTCAGCATGCAACACCATCAAAATAAAACAGTTCATTCAAGACAAGCCGGTTCTTTCCAAGGCTCGACTCTCGCTCCCAAACAATCTCAAAATTGTAGCGATGTCCGAAGGATCTCATTCAATCTTAGCATTAGAAACAATCCAAGAAGGGACACGGTTTGGTCCATTCGAAGCTAAAAAAATATTTACTTTAGATCCCAATGTCCACTTTCCACTCAAAGTTTTCCAATGCGATTATTTCAAAGAATATTACTTGGACACTTCCGATGAATTTGAGTGTAATTGGATGTATTTTGTTCAAGCAGCTAGTAATACAGAAGAACAGAATTTGGTGTGTTACGAAGATGAATCCAAGATTTATTATGTTTCTATTAGGAAAATTCTTACTGGAGAACATTTGAAAGTTTGGTATTCACAGTATTATGGGAAAATGATGAATATTAATGGATTGATTAATACCGATGTTGAAATTATTGAACATGAAGAAAGTTTGGATATTAATAAGTTAGTAAAAGAACAACAAGGTATTGGAGATAGGAAGATATGGATGTGTAAATTTTGTGGCAAACAACAAGATGATGTAATTGTGTTTGCAATCCACATTAGTGAACATTATAATATGCAATTACGTAAAATTTGTGAGATGTGTAAAGAAACTTTCCAAACAAGAAAGAGTTTGAAAAAACACATGTTTTTAATTCACTCGAATGAAAGTTATGCGAATAATATATCTTTAGAAAAGTCTGCGAGTGATCAGAAAGAAGAAAACTTGAAAGATAAAGTTGATACGATGCTTGGAGGACCATTATTGAATGAAATGCTTTCAGAAACTTTGGAAAACACCAATGTACTTTTAGATCACATGATGCTATCCAACTTTGATATGGACCAACCGAACATTATGTTAGAAGGTGATAATTTAAACCTTGGCATGGAAAATTTGCTGAATGATTCGGAAAACTTCAATTTTAATATAGAAGAAACCAGCGAAAAATTTGTTTGTGATATTTGTTTAAAGCATTTTAATAAGTTGAAATTGTTAATTACACATTTAACTGGACATACTGGGAAATTCACTTGCAGAAATTGTGCTACAGTTTTTTCTCGGAAAGAAAATTTTGTTTCACATCGATGCAATTCCGCGCCTATCAAGTGTGATTACTGTGAACAGAAATTTTCTTTGAAAAAGTACCTGACAAGACATATAGCAACGAAACATAATACAGATTTTGTTTGTAACAAGGATTGCAAGAAAGTTTTTACGTCAAAGAAAACTTTGGACGAACACAAATGTATTCCTGAAAAAGTCATTTTAGCTTGCAGTATGTGCAAGAAGGTATTTCATAATAACAAGAATTTGAAAAGGCATATGCAAATACATTATTCGAAAGCTATTAAGGAGAAGAATGTTGTTCCCCATCTTTGTGAAATTTGCTCCAAACAGTATTCTTCAAAGAAGGTGTTAAATCAACATTTGCGAACTCATAGGGAGAGACAATTTCATTGTAATTTGTGCGATAAGAAATTCATCAGAAAACTTACTTTTATAGAACATATGCAAATACATAAAGAAACTTCGAATTTTAAATGTGAGATATGTGATCAAAAGTTTGCAGTGAAGAAGTATTTGACCACACATATGGCAATCCACAGCAACGAATTTAAATATGAATGTACTAAATGTTCTCAGAAATTCAAACAGAAAACGAATATGCATACTCACTATAATCGGATGCATCGAAAAAAGTGTTTAACTTGTGATGAAGTTTTTGATACAACGGAAAAATTGAAGCAACATAGTATTATTCATTATGAAAAGTGTTATGAGTGTCCAGTTTGTAAACACATAGTTAAATTAAAAAGCTCGTTGTTGAGACATTTGAAGAAGAAGCATTCACATGATGAAATTGATATGACTAAAATACGAAGAATTGAAAAACAAATATTTAAAGAAAATACTGATAATGATAATAATAATTCGAATGAGAAGGAAAATGACTGTGATGATATTGTAGGTTTGTTGAATTTAAAAGAAAAAGGAGATTCAGATACTTTACAAGATCTAGATAGCAACTTAGATTATATTGTTAATAATTACGACACAAATTTGATGGATAACAATTTTTCTGATAAAAACGAAAAGAATTTGGATAGTGTTCTTGATTTCAATAGTTTAGAAATGGAATTTGAGAAAAATATCCAATCAACTGACATGGAAGCCAATCAGCAAGTCTGTTTATCCATGCCTGAATTGGGCGATATGGACCAAAGTATTAGTTTAGGAGAAAATACTTTTATGTTACAAAATGGAAACATTTTGGAGCCAATAGAACAAGGAAAACTTGTTTTGTATATATTAGATAAAGATCAGAATAAGTGTTAA
- Protein Sequence
- MVLDPEPEDEIKSLCGICGRAHKCSACNTIKIKQFIQDKPVLSKARLSLPNNLKIVAMSEGSHSILALETIQEGTRFGPFEAKKIFTLDPNVHFPLKVFQCDYFKEYYLDTSDEFECNWMYFVQAASNTEEQNLVCYEDESKIYYVSIRKILTGEHLKVWYSQYYGKMMNINGLINTDVEIIEHEESLDINKLVKEQQGIGDRKIWMCKFCGKQQDDVIVFAIHISEHYNMQLRKICEMCKETFQTRKSLKKHMFLIHSNESYANNISLEKSASDQKEENLKDKVDTMLGGPLLNEMLSETLENTNVLLDHMMLSNFDMDQPNIMLEGDNLNLGMENLLNDSENFNFNIEETSEKFVCDICLKHFNKLKLLITHLTGHTGKFTCRNCATVFSRKENFVSHRCNSAPIKCDYCEQKFSLKKYLTRHIATKHNTDFVCNKDCKKVFTSKKTLDEHKCIPEKVILACSMCKKVFHNNKNLKRHMQIHYSKAIKEKNVVPHLCEICSKQYSSKKVLNQHLRTHRERQFHCNLCDKKFIRKLTFIEHMQIHKETSNFKCEICDQKFAVKKYLTTHMAIHSNEFKYECTKCSQKFKQKTNMHTHYNRMHRKKCLTCDEVFDTTEKLKQHSIIHYEKCYECPVCKHIVKLKSSLLRHLKKKHSHDEIDMTKIRRIEKQIFKENTDNDNNNSNEKENDCDDIVGLLNLKEKGDSDTLQDLDSNLDYIVNNYDTNLMDNNFSDKNEKNLDSVLDFNSLEMEFEKNIQSTDMEANQQVCLSMPELGDMDQSISLGENTFMLQNGNILEPIEQGKLVLYILDKDQNKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -