Patr042787.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000726.1:527891-529798[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.9e-06 0.00061 22.9 1.6 1 23 328 350 328 350 0.98 2 7 5.1e-06 0.0016 21.6 3.1 1 23 409 431 409 431 0.98 3 7 3.8e-07 0.00012 25.1 0.2 1 23 437 459 437 459 0.97 4 7 0.00022 0.071 16.4 0.5 3 23 467 487 465 487 0.95 5 7 0.00031 0.1 15.9 2.3 1 23 494 516 494 516 0.97 6 7 4.6e-05 0.015 18.6 0.8 3 23 524 544 523 544 0.97 7 7 1.7e-05 0.0054 19.9 2.9 1 23 550 573 550 573 0.96
Sequence Information
- Coding Sequence
- ATGGCTTTACGGACAGAAAACAAAATAATCTTATGTCCGAAAAATCGTTGCAGAATCTGTTTGGAAGCGACAAACGGAAAACTCGCGTTAAACCAAACAATAAATTATAAGAAAGCTGAGATTACGCTGAACGAATTGTTGGAATTTTGCGTGAACGAACAGGTCTGCGAGAATGGAAAAGCAGACGGACTCTGTTTAGCTTGTATGGAGAAGGGGATAGTTTGTTACGAATTCAAGAAGAAGTTTCAGGAATCCCAAAGCATTTTACTGAAAGAAATAGAAGAAGGCAATAGCTTTGTAATAAAGACTGAAGAGGATTCAAAAGAGGAAGATTTAGTGGAAATAACAGAGACTGAGATATTAAAAGAAGAGATTTTGAACGATGATGTATCGATGGTTGCAACAGAGAATGGTGTATTAGCGGAAAAGATTTTAGATGAGGAAGTATTAACAGAGAGTGATGAGTTATTAAATGAAGAGATCTTGGAAGATGATGTATTGATGGTTGCAACAGAGAATGTGGTATTAAAAGAAAAGATTTCGGATGAGGAAATAGAAGAAGGCAATAGCTTTGTATTAAAGACAGAGGAGGATTTAAAAGAGGAAGATTTGGTGGAAATAACAGAGAATGAAATATTAAAGGAAGAGATTTCGGATGAGGAAGTATTAACAAAGAATGATGAGATAGTAAATGAAGAGATATTGGAAGATGACGTATTGTTGGTTGCAACAGAGAATTGGGTATTGAATAAAGAGATTTCGGGTGAGGAAGCAGTAACAAAGAATGTTGAGATATCAAAGGAAGAGAGTTTGGATGAAAAAGTGCAAATTACAGAAACTATTAAATGTCATGAGGACCAACAAGATATTTTGAATACATCTGGTGATAAACCAACAGTGATATCTTTCAAAGTTAAAAAAGGTAGTCTGATGCGCCACAAGCTCGAACACTCTTCTCTAGATCAAAAACACACCCCTGAATACAAATGCGAAGTTTGCGAGAAAACCTTTAAATCGCGCTCTGGTCTCGTCCGCCACAAACTCAAACACACGCAAACTAGAAAAAAACGAAAACGTTGCAGTTACGTCCAAGAATCTTCTGCAACGTCGGCGCAAAGCATGAGAAACGTCTTTCAACAAGAAATTTTGAAAAACACCGATCCACTACTACCAGTAACAGAGACTGATAAACCAACACCGCCACCAACAACAAACATTGATAAACACACGTGCAAATATTGCGGGAAGAGTTTGTGCAGCGCCGCATATTTGGTTATTCATATGAGAACCCACACCGGAGAGAAACCTTACTCTTGCAAAGAATGTGGAAGAAGTTTCGCACAACGCTCGGCGTTGAGAGTGCACCAAGTTGTGCACACGAAGCAAAAGGATCACCTTTGCAAGATATGCGGTGCAACATTCGCCAGAGGCGTGTATTTAAAAAAACATGTACAGGTACACTCGACGGAGCGGCCGTCCTATAAATGCACTATATGTAAGAAAACCTTTACATCGCTTGGGGGGAAGAATGACCACATGCACGCGCACACGGGAATGCGAAATCGCGCGTGCGAGTTCTGCGGGAAGCGATTCAACAGGAACGCCAGTCTCTACCTTCACCGGAAGATCCACACGGGCGAAACACCTCACATCTGCAAAGTTTGCGGCAAAGGTTACATACAATTTCAAAATTTAAGAAAACACATGAAAAAAACTCATTTGACCAAATGA
- Protein Sequence
- MALRTENKIILCPKNRCRICLEATNGKLALNQTINYKKAEITLNELLEFCVNEQVCENGKADGLCLACMEKGIVCYEFKKKFQESQSILLKEIEEGNSFVIKTEEDSKEEDLVEITETEILKEEILNDDVSMVATENGVLAEKILDEEVLTESDELLNEEILEDDVLMVATENVVLKEKISDEEIEEGNSFVLKTEEDLKEEDLVEITENEILKEEISDEEVLTKNDEIVNEEILEDDVLLVATENWVLNKEISGEEAVTKNVEISKEESLDEKVQITETIKCHEDQQDILNTSGDKPTVISFKVKKGSLMRHKLEHSSLDQKHTPEYKCEVCEKTFKSRSGLVRHKLKHTQTRKKRKRCSYVQESSATSAQSMRNVFQQEILKNTDPLLPVTETDKPTPPPTTNIDKHTCKYCGKSLCSAAYLVIHMRTHTGEKPYSCKECGRSFAQRSALRVHQVVHTKQKDHLCKICGATFARGVYLKKHVQVHSTERPSYKCTICKKTFTSLGGKNDHMHAHTGMRNRACEFCGKRFNRNASLYLHRKIHTGETPHICKVCGKGYIQFQNLRKHMKKTHLTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01197083;
- 90% Identity
- -
- 80% Identity
- -