Patr091987.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- salm
- Assembly
- GCA_944567605.1
- Location
- CALYMX010002150.1:110840-113761[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.2 2e+03 2.4 0.0 2 23 7 28 6 28 0.91 2 14 0.15 48 7.5 1.5 1 23 485 508 485 508 0.87 3 14 0.29 91 6.6 0.0 3 23 594 615 592 615 0.91 4 14 0.19 62 7.2 0.9 1 23 623 645 623 645 0.89 5 14 1.8e-05 0.0058 19.8 1.9 2 23 648 669 647 669 0.97 6 14 0.0071 2.3 11.7 1.0 1 23 675 697 675 697 0.98 7 14 6.5e-05 0.021 18.1 5.1 2 23 704 725 703 726 0.95 8 14 0.0002 0.065 16.5 1.9 3 23 764 785 763 785 0.97 9 14 0.045 14 9.1 0.0 2 23 801 821 800 821 0.97 10 14 0.00023 0.073 16.4 1.5 1 20 827 846 827 849 0.92 11 14 0.0004 0.13 15.6 0.2 1 23 857 879 857 879 0.99 12 14 0.0013 0.4 14.0 3.7 1 23 885 907 885 907 0.98 13 14 5.2e-07 0.00017 24.7 4.1 1 23 913 935 913 935 0.99 14 14 0.0019 0.61 13.5 7.4 1 23 941 963 941 964 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCAGATAATACTGTATGTCCTGTATGCACCCTGTATTTGCGACCAGGAATCACACTGAAAGCTCATTTGGCTAGTCACCCCAAACAGAAAGTGATTGAAGCCCTCGTAAGGCTCTCGAAACCAGATCCTCCAAAACAAATAGAAACCCCATCGAGTACAGTCGAGCCGAGTACTAGTCAGCAATGGAGTGCTCCAAATATTCCTGTCAATGGACAACCAAGCCCACCCCCAGCAAACCACTCCTTTATCTATCAACAATTTATGAGTTCATCCTCACCTCAGTCAAATGTTTTAAATGTAAATCATTTAGGACAGCCTTACGTTACTATTCCAACTGTTTTCAATCCACAAATGATGTGTCAGCCTTATGTGTATCAGCAGCAACAAGTTATCATGTCTTCAGGTCATCAAATGCCTACAATTCCAAGAATCTTGCCTGTTGAGAGTACTCAGGTTGGACCAGAGGTAACAGAAGAAATTCTTGATAACATCGAAGAAATTGATAAGGGTGAAAAAGATGAACCAGAGATGGTGTTAATTGAAACTAATGAGGAGGTTGTTGAGGAGAGGCATGAAAATATGATGAGCGAGGATGAGGCTGTTAGTGAGATTGATGAAGGTGAAGAATGTGTGGTTAAGGAGATTATTGAGGGTTTGGGAGTTAAGGATGAAATCATTCATGATAATGGCATGATATCAATATCACAGCCTTTAATAATAAATCTTAACCAAACAATTGAATTTGATGAAGAAGAACGTGAGTTGGGCTCTCCTTGCTCAAATGCCAGCTCAGACTATATACGTGTTCGACGAGATCTCAATAAGTCATGCCAAACACAAAACACTATTGAAGAGTCTGAACCACCACCAGAAGAACAGAAGCAAACATATTATCCAGAAACAGAACCAGTTCAAACTGATTCCAGTTACATAACTTTAACTAATACTGATAATGAAGTAGTTACAGATAACTCTGTAGCTTTAGAAGCCCAAAATGTTAATTTGGTGGATATGGATGGTATGAATTTGATATTGAATAATGGATTTATTCAGAATCAGATTATAGCTCCAGTAGAAGAATTTGAATACAATAATCGTTATGAACGACCTAGAGTTCTAATGAACATAGGTGAATATACTGAAACCAGAGAAATAGGCGATGAAAGTATATCAATAGACAGTGCTAATATAAGAGCTGATGAGCATATGCCTCCAAGAGGAGAACTCTCGGGCCAAGAAAGTAATGCTAGTGATATTCCTTGGTCTCGTATTCAATATCATGAAGGTAACTCCGGTATGTCCACCTCTTGTGATTTACTAGCCACCGAAACATGGGATGGTTCTGATGTTTCTGATAATGAGATAACACCATTACAAAGTCGTGTTCCTCCAACATATGATAATGATACACCCACGGTTTCAGGATATTCTGATCCTCCAATTCAGTACAAATGTCCGATGTGTGATGAAAATTTTAATTGTCCCAAAGAAAGAAGAGTACATCAGGCTGAAAAACATGAAAATCAAGAAGAGCCAAAGGAATGTAAAGAAAGTGGTTCAAAGTTGATTGGGAAGAAGAAAGTAAAGAAGCTGGTGATTAAATCTAAGAAGGTTATGGTTAAAACTGAGAATAATTTTGATAATGTGTTTACGAATAAGCTGAAGTTTGAGGAAAATGAAGCAGAGAGGAGTAGTGTAATATTGGAAAGTAAAACGCAGATTATGGATGTTGACAAGGTGGAAGATCCACTTTCTATTTCTAATCCTACTATTTGCACAATCTGTGAAGCGGTTTTGCCAGATAATATGGCTTTGAAACAACATCAGTTTGAAATCCACAATTTTGGAGCGGATGAACGGTATAAGTGTACGATGTGTAATGAAGTTTTTCCATGTGAGCCGAAATATACTGAGCATCTCGCTATACACCCGTTAGAATGTAGATTATGCGGAAAATATTTCTATAGAAGACAAAATCTCCAATTACATATGAAACGACATTTAGGAATTCGTCCTTATAAATGTACTATTTGCGAAAAAGCGTTCTTGACCAAACAAAAACTAGATGAGCATAAGAATATTCATACAGGGGAAGCGCCGATAAAATGTAATTTGTGCGACGAATCATTTAGACGCCATTCGAATTTGGTTCAACATAAAAACCGACATCATTTTAATATCAAAAGAAAAATCAAAGATTACATTTGTTCATGCGGTGACATTTTCCATTCCAAAAAGAAATTGGCTTGGCATAAAGAAATTCACGAAAACAAACCCAAGGCTTGTACACAATGCAGCGAGAAATTCATTCATGGGTCAAGTTTAACCCGTCACATGCGACGAGCTCATAATGAGCGTTTCGTTCCAAAAGAAGACAGAGAGACAGAAAACGTAGAATGTCCAGTTTGTAACGGAGTTTTCTTAAGATCTTCCCTAGACGTCCATATTCGAAGTCACAGTGGTAATCGCCATTTCCGTTGTTTAATCTGCAACAAAGATTTTACAACCAAATGGAATCTTAAATTACACAAATGGACCCATGCGTCAAGAGCTTCAAAACCTTATAAGTGCGATCAGTGCAAAGGAGCGTTTATTCGAGAAGTGGACTACACTGCTCACATGAACTCCCACAAGTCCATTCGACCATACACTTGTAATTATTGTGGGGCACAATTTATAAGGAAGTATAATTGCCAACGACATGTTAAAGAGCATGAAAAAGTAAAGACTTTTAAATGTCAAGTTTGCGGTAAGAGTTTCCATCGTTCGTATTATTTAAAGGACCATATGCGAGTGCATAGTGGCGTTCGGCCCTATTCGTGTCATATTTGTGGCAAAACTTCCACCACAAAAAGTAATCACAATAAGCATGTTAAGATACATCATGCAAGGGAGCCCGTCAGTACAGAAAATTAG
- Protein Sequence
- MEADNTVCPVCTLYLRPGITLKAHLASHPKQKVIEALVRLSKPDPPKQIETPSSTVEPSTSQQWSAPNIPVNGQPSPPPANHSFIYQQFMSSSSPQSNVLNVNHLGQPYVTIPTVFNPQMMCQPYVYQQQQVIMSSGHQMPTIPRILPVESTQVGPEVTEEILDNIEEIDKGEKDEPEMVLIETNEEVVEERHENMMSEDEAVSEIDEGEECVVKEIIEGLGVKDEIIHDNGMISISQPLIINLNQTIEFDEEERELGSPCSNASSDYIRVRRDLNKSCQTQNTIEESEPPPEEQKQTYYPETEPVQTDSSYITLTNTDNEVVTDNSVALEAQNVNLVDMDGMNLILNNGFIQNQIIAPVEEFEYNNRYERPRVLMNIGEYTETREIGDESISIDSANIRADEHMPPRGELSGQESNASDIPWSRIQYHEGNSGMSTSCDLLATETWDGSDVSDNEITPLQSRVPPTYDNDTPTVSGYSDPPIQYKCPMCDENFNCPKERRVHQAEKHENQEEPKECKESGSKLIGKKKVKKLVIKSKKVMVKTENNFDNVFTNKLKFEENEAERSSVILESKTQIMDVDKVEDPLSISNPTICTICEAVLPDNMALKQHQFEIHNFGADERYKCTMCNEVFPCEPKYTEHLAIHPLECRLCGKYFYRRQNLQLHMKRHLGIRPYKCTICEKAFLTKQKLDEHKNIHTGEAPIKCNLCDESFRRHSNLVQHKNRHHFNIKRKIKDYICSCGDIFHSKKKLAWHKEIHENKPKACTQCSEKFIHGSSLTRHMRRAHNERFVPKEDRETENVECPVCNGVFLRSSLDVHIRSHSGNRHFRCLICNKDFTTKWNLKLHKWTHASRASKPYKCDQCKGAFIREVDYTAHMNSHKSIRPYTCNYCGAQFIRKYNCQRHVKEHEKVKTFKCQVCGKSFHRSYYLKDHMRVHSGVRPYSCHICGKTSTTKSNHNKHVKIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -