Patr015278.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000228.1:210201-216017[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.28 90 6.6 0.8 2 23 159 181 158 181 0.92 2 13 1.5 4.8e+02 4.3 0.3 3 22 189 205 189 206 0.75 3 13 1.4 4.4e+02 4.5 7.7 2 21 210 229 209 231 0.93 4 13 0.0055 1.7 12.0 5.0 1 23 237 259 237 259 0.96 5 13 3.9e-05 0.012 18.8 0.5 1 23 265 287 265 287 0.97 6 13 1.4e-06 0.00046 23.3 1.3 3 23 355 375 354 375 0.98 7 13 8.3e-05 0.027 17.7 3.0 1 23 381 403 381 403 0.99 8 13 0.00011 0.036 17.3 0.5 1 23 409 432 409 432 0.95 9 13 6.7e-07 0.00021 24.3 0.6 2 23 438 459 437 459 0.97 10 13 0.0007 0.22 14.8 6.0 1 23 465 487 465 487 0.97 11 13 1.8e-06 0.00056 23.0 0.8 1 23 493 515 493 515 0.98 12 13 1.9e-05 0.0062 19.7 1.8 1 23 521 543 521 543 0.98 13 13 0.91 2.9e+02 5.0 1.4 1 17 554 570 554 571 0.94
Sequence Information
- Coding Sequence
- ATGATCGGAGGACCATTTCTCCCGCTCTCGCTAGCCCTGACCACCCTAACCATCCATACGGGTTGGTTACCGCATCTCAGGCCAGAGTGGTCAGGTTACCAGGGTTCACCAGACGTGGAGACTGAACAACATGTTGAAGAATATTCACCAAATGATATTCAAATGAAATTTGAGGAAGATGTTGAATATTCGACAACTAATATTGAAATGAAAGTTGAGGAAGATGTTGAATATTTTCCAAGTAATATTGAAATGAAATTTGAAGAAGATGTTGCATATTCAATAAGTAATATTGGAATTAAAGTCGAGGAAGATATTGAATATTCGCCAAGTAATATTGAAATAAAAGTTAAGGAAGATGTTGAGGAAGTTGAAGAAAATGTCAAAGAAAAATGCAAACAGAGACTTGAACAGTTTCCAGTTGAAGCTGTAATGGAGGCAATTCGACAAGTCGATGACCACCTCAGGAAAATTGAGTGTTTGAAGTGTGGATTTAAGGCAGTTAATACTAAAGCTCTTAGTCGTCATATCACACACATGCATAAGGATTTGAAGGCGAGATGGTGTCCACAATGTAATCAAGTCTTTGAAAACTTGATTGAACATTCCAAAGAACATGTGGAAATACCATGTCGATTTTGTAAAAAGGTCTTCCATTTGAAATGTAACCTCAAAGAACATCTCCGATGTCATGCTGGCATTCGCCCATACAATTGCAATAACTGTGAGAAATCATTTGCAACTTTTCAAAGCTTGAAGGATCATTGTCGAAAGCATGCCAATGAAATGCCATTTTCTTGTCATATCTGTGGGAATGCTTTTGTGTCAAATGGATCATTGATCTCGCACGTCAAACAGCATAGACAAACAGAACAAGGACATGGAATTGTCTCGGAAGTGAAAGCTGTAACAGATTCATTGATAAAAGTGAAAGAAAAGCCACAAATATTAAGCTTGTCAGAACAGAATTCTGGCGAGATTTGTCAAAAGAATGTCGAAAGTTTGACAATACATAACAAAAATGAACATGGGGAGGCAACTGGAGACGACAGTTTGAAACTCTGCACAGTTTGTGGAAAAAAATACAAGACGAATAGGAATTTAAATATCCACATGAGATTACACACAGGGGAATCCCCATACAAATGTCAACATTGTGAAAAGCGACTTAATACAAGGAATCAACTGGTTGTACATGTAAGGACCCACACAGGAGAGAAACCCTACATTTGTTCCATCTGTGGAAAGGGTTTTACCACGTCCACTATTTTAAAAACCCACATCTTCAGACTTCATACAGGTCGACCGCAAGTTTGCACAATCTGTGATCAAAGGTTTAGTCGGTCTGCAGCCCTCCGCCTACACATGAGGAAACATACTGGTGAGAAACCGCACCATTGCACCACTTGCAGCAAGTCGTTTTCCCGCCGCAGCCGTCTAATGGAACACGTCAAAATCCACAGCGACGAGCGCCCCTACAAGTGTTCCTACTGTGGTCAGGGCTTTAAGCAGAGTGCTTCGCTAAAAACACACGAACAAATCCATTCGGGTGAAAAACCGTACCATTGCACCATGTGCACCCAATCGTTTGTCCGCCGCAGCGCCTTAACAGTTCACGTCAAAATCCACAGCGACGAGCGAGCTTACAAGGAACAACCATATCGGTGCAGCCAATGTGCCTATGCCTGTCGACAAAGCTACAGCTTAACTTTGTTTATGAAACAGCACGTCGAGGATTTGCCTACGCTGGATCGTCCATAA
- Protein Sequence
- MIGGPFLPLSLALTTLTIHTGWLPHLRPEWSGYQGSPDVETEQHVEEYSPNDIQMKFEEDVEYSTTNIEMKVEEDVEYFPSNIEMKFEEDVAYSISNIGIKVEEDIEYSPSNIEIKVKEDVEEVEENVKEKCKQRLEQFPVEAVMEAIRQVDDHLRKIECLKCGFKAVNTKALSRHITHMHKDLKARWCPQCNQVFENLIEHSKEHVEIPCRFCKKVFHLKCNLKEHLRCHAGIRPYNCNNCEKSFATFQSLKDHCRKHANEMPFSCHICGNAFVSNGSLISHVKQHRQTEQGHGIVSEVKAVTDSLIKVKEKPQILSLSEQNSGEICQKNVESLTIHNKNEHGEATGDDSLKLCTVCGKKYKTNRNLNIHMRLHTGESPYKCQHCEKRLNTRNQLVVHVRTHTGEKPYICSICGKGFTTSTILKTHIFRLHTGRPQVCTICDQRFSRSAALRLHMRKHTGEKPHHCTTCSKSFSRRSRLMEHVKIHSDERPYKCSYCGQGFKQSASLKTHEQIHSGEKPYHCTMCTQSFVRRSALTVHVKIHSDERAYKEQPYRCSQCAYACRQSYSLTLFMKQHVEDLPTLDRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -