Basic Information

Insect: Phosphuga atrata
Gene Symbol: -
Assembly: GCA_944567605.1
Location: CALYMX010001752.1:56304-67269[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.038 12 9.4 2.1 1 23 154 177 154 177 0.85

2 10 0.0051 1.6 12.1 0.3 1 23 183 206 183 206 0.97

3 10 1.2e-07 4e-05 26.6 0.5 1 23 212 234 212 234 0.97

4 10 2.4e-06 0.00078 22.6 5.8 1 23 240 262 240 262 0.98

5 10 2.8e-05 0.009 19.2 0.2 1 23 268 290 268 290 0.97

6 10 2.4e-05 0.0078 19.4 5.6 1 23 296 318 296 318 0.99

7 10 0.00034 0.11 15.8 0.4 1 23 437 459 437 459 0.95

8 10 7.3e-06 0.0023 21.1 1.2 1 23 465 487 465 487 0.98

9 10 7e-06 0.0022 21.1 4.7 1 23 493 515 493 515 0.99

10 10 5.3e-06 0.0017 21.5 2.0 1 23 521 543 521 543 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.038	12	9.4	2.1	1	23	154	177	154	177	0.85
2	10	0.0051	1.6	12.1	0.3	1	23	183	206	183	206	0.97
3	10	1.2e-07	4e-05	26.6	0.5	1	23	212	234	212	234	0.97
4	10	2.4e-06	0.00078	22.6	5.8	1	23	240	262	240	262	0.98
5	10	2.8e-05	0.009	19.2	0.2	1	23	268	290	268	290	0.97
6	10	2.4e-05	0.0078	19.4	5.6	1	23	296	318	296	318	0.99
7	10	0.00034	0.11	15.8	0.4	1	23	437	459	437	459	0.95
8	10	7.3e-06	0.0023	21.1	1.2	1	23	465	487	465	487	0.98
9	10	7e-06	0.0022	21.1	4.7	1	23	493	515	493	515	0.99
10	10	5.3e-06	0.0017	21.5	2.0	1	23	521	543	521	543	0.97

Sequence Information

Coding Sequence: ATGACGATGAACTCGACGGAAGATTGGCGGAGTTACACAACCATATGCAGGCTGTGCATGCAGCGAGATGGATTCATGCTCGGGATTTTCAATCACATTCAAGGAAAGGAGAAGAGTATTTCGAAGAAAATTATGGATTGCACCGCGTTAGAGATATCTTACGGTGACGGTTTACCGAACTCGATATGCCATCGCTGCCTCTACAAGATCGAATTCTGTCTGGAATTCCGTCAACAGTGTTTCGTGTCCGACGCGACGCTCCGTCAAATCAACGGCCTCTCCAAACACATCCAGAACCCTCCGCCCGCCCTCAACTTCCCTCCAAGCGGGGACGCCGACGTCGTCATGGTCGTAGATCCCAACACGCTCGACTACGATTCCGAGTACGAATCCGAAGCTAACGGCACCGAGCATCACAGCGACAACGAGACGAACGATCTCTGCGAGTTTCGGAACGTTTTCATGTGCAAATTTTGCGACCGAGCTTTTACCGATAAGACTGAATGTGCGGCCCACGAGAGCAACAGTCACAACAACGTTGTTCCGTACAGTTGCAGCCTCTGCGAGATGAACTTCGCGGATCGTTTGCAATACTCGGCTCACCTGAAAAGTGTTCACCAAAACGATAAGCCTTATAATTGTCCGGAGTGTGATAGAACCTTCGCGAGGAGATCGGATCTCCGCAAACACACCATCGTTCACACTGGCATCAAACCTTTCACATGTCACATTTGCTTTAAATCATTTTCAAGAAACACAAACCTCTCCAAGCATAAAAGAATCCACAAAGGACAGAAACCCTTCGTTTGTCCAAGCTGCCCGAAAACTTTCATCTCGAAGCTTGAACTGACTCGGCACGCTGTCACGCATTCCGGAATTAAACCATTTAAATGTAGCTATTGCCATTTGAGCTTTGGCAGGAAAGATAAATTGCTGCGACACCAAAAACGTCACTTTCCTCAAGAGAACAGCGAGGATAAAACGCAAGAGCTCAGATTGATGCGGGAAAACTTGGCGACGGAATACGGGTACATCAACCAAGACAGCAACGAGAATACCATTGAAGGCACCAAAGAAGAAAGCAAAGAATGGGCCAGCAGTGAAAACATGATCATCAACATCGACCCTTTTAATCACGAGGAGCAAGTCGAGCACATAAATACCGAACCTGACATGCCTTTAGGCGAGAACGAAGTCGATGCGGAGAAAGACACCTTGCCGCATGTCCCTGAACATATCACTGGAGATAGCTTCTCTAATAATCAAGATACTGATAATGGTGTTGATCCTCCTGAGAAGTTGAAAAGATATCcgtgcgagatgtgcccccgtcggttttcaagctcggagggtctgcacttgcacaaaggcgtgcacaccgggaatcgcccgttcagctgccagctctgcacgaagggcttcatgcgaaaacgggaattggaacggcacatggccacccacaccggcatgaagcccttcaagtgcacgagctgcagcaaatgcttcggccggaaagataaactggtgaggcacatgcggatacacgacgtcaacaaggagcacatctgcgtcatttgcggggcttcgttcaacaggaaggacggtttatcgcatcacatgaagactcacGTTAAGGAGGAAGAGGAGTTTGTTATGTAA
Protein Sequence: MTMNSTEDWRSYTTICRLCMQRDGFMLGIFNHIQGKEKSISKKIMDCTALEISYGDGLPNSICHRCLYKIEFCLEFRQQCFVSDATLRQINGLSKHIQNPPPALNFPPSGDADVVMVVDPNTLDYDSEYESEANGTEHHSDNETNDLCEFRNVFMCKFCDRAFTDKTECAAHESNSHNNVVPYSCSLCEMNFADRLQYSAHLKSVHQNDKPYNCPECDRTFARRSDLRKHTIVHTGIKPFTCHICFKSFSRNTNLSKHKRIHKGQKPFVCPSCPKTFISKLELTRHAVTHSGIKPFKCSYCHLSFGRKDKLLRHQKRHFPQENSEDKTQELRLMRENLATEYGYINQDSNENTIEGTKEESKEWASSENMIINIDPFNHEEQVEHINTEPDMPLGENEVDAEKDTLPHVPEHITGDSFSNNQDTDNGVDPPEKLKRYPCEMCPRRFSSSEGLHLHKGVHTGNRPFSCQLCTKGFMRKRELERHMATHTGMKPFKCTSCSKCFGRKDKLVRHMRIHDVNKEHICVICGASFNRKDGLSHHMKTHVKEEEEFVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01126672;
90% Identity: -
80% Identity: -