Patr072946.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010001444.1:146725-150053[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1 3.3e+02 4.9 0.5 1 21 144 164 144 165 0.94 2 18 1.3 4.3e+02 4.5 3.0 1 23 194 217 194 217 0.92 3 18 2 6.5e+02 3.9 0.6 5 21 227 243 224 244 0.91 4 18 5.2e-05 0.016 18.4 1.7 3 23 361 382 360 382 0.97 5 18 0.0015 0.47 13.8 1.3 3 23 395 415 394 415 0.97 6 18 3.5e-05 0.011 19.0 0.0 1 23 446 469 446 469 0.93 7 18 8.1e-06 0.0026 20.9 0.1 1 23 471 493 471 493 0.96 8 18 0.00044 0.14 15.5 0.2 2 23 513 534 512 534 0.96 9 18 8.4 2.7e+03 2.0 1.3 2 23 588 609 587 609 0.94 10 18 0.00057 0.18 15.1 7.5 1 21 631 651 631 653 0.95 11 18 0.28 90 6.6 1.8 3 23 675 695 673 695 0.96 12 18 0.0046 1.5 12.3 0.1 2 23 728 750 727 750 0.94 13 18 0.0001 0.033 17.5 0.8 1 23 766 788 766 788 0.95 14 18 0.007 2.2 11.7 0.3 1 23 819 842 819 842 0.94 15 18 0.0071 2.2 11.7 0.5 2 23 855 876 854 877 0.94 16 18 2.9e-05 0.0094 19.2 1.5 2 23 887 909 886 909 0.96 17 18 1.1e-05 0.0036 20.5 0.4 1 23 918 940 918 940 0.98 18 18 0.0011 0.36 14.2 0.3 1 23 970 993 970 993 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAATTCTCTCCACCGCTTCAGGCGCTCGTGGGGAGAAGTCACGTTCCGTCCGATTTTTTGATGTTGTCGTTCGTTGATGTTGTTTTGCCGCCTAGCCCTGTTTTAGATGATGTATCAAGTGCAGAGAACCATTCGAACACTTCGTCGCCGGTGATATTCTACGAGAACCCGGAACAAGTCGCAGAAGGAAGGACGATGAAAGACCAGGAGAAAATTGATTTCGCTGCGGGTTTGTGTCTCCAATCGAAATCCGCCGCACCGAAGCAGTCCCAGTTGACTAAAATCGAACAGATGTATCTGGAAAAATGCAAAGTTATGATTTCAATGTTCAACACTAACATCTGCGCTTGCCACAATCAAAAGTACGTGAGCATGAAGCAAATGCTGGGACATCTACGACAGTTGTACCCTTGCTTCCCCCCGTACACTTGTTACAACTGTCTTGTAACGTTTGACGGGCGTTCCAGTAAAATGAGGCACATAACTAGATGTCCTAGATTAACGATGGAATCTTTAATTCGACTGTCCGAGCTGAGGGCGCGCACCGACGACAAAATTAGACTTTACCAAAACTTTAAGTGTTTAGATTGCAACTTCTTGTTTAGTTTCTACGAGGATTATTGCGACCACGTGGACAACATGCACGTTTCCGATGAGAAACCTCACGTTTGCGTGTGCCAGGAACAATTTGAAAACGCCGACTTGTTTAGGCAACACATCCACAAATCTTGCTACTTAAACTATTACTGCGACGTTTGCTGCGTGCTGACGCCCAGTTTGGAAGAGTTTACTCAGCATTGCGAGGAATCACACGACCACGAAGAAGATTACACTTTCTTAGCCGTCGCTCCAAACTTCATCACTTTGAATAATATAGAGATCGCTAACATTTTGCTGGAAAGTAAAGAAACCCAAAAGGCAAAGGATGAGGAAAAAGCTAGAAAAATAGAAGAGAGGTTGGCTGAGAAGGGAATTGAATTTGTTCCCATTTTGGAACCTGCCGAGGAGACTTTTGTGGAACCTCTGAAGGTGTTAAATCCCGCCGCCTTGTTCTCTAATAAAAACCAGAGAGATTGCGGAATATGCGGTAAAACTTATTCCAATTACCACAACATGATAAGACATTTGAAAAGCTTTCACGGAATTGATCCGAACACGAAAGCCTCTGCTCCGATATGCGACGTTTGCGGAAACGAGTTCAGCAGTTATCACAACATGTTAAGACACAGGAAGATTCACGAATCCCAACATTCAGAGGGCACAGAATTTAATGAAAATTCCGAAGTTTCAATCACCAAACTCTCTCCTATGAAAGTTGCCAGATCTTCGTTTAGGTGTGAGGAATGCGGAGAAACGTTCAAAAACGCTGTTTCATTGGAAGAACACGTGGAGGAAGAGCATACGTTTGCTTGTGCTAAATGCGGCAAGGAATTTAGTAATCCAGAGGATTTAGAGCAACATCGCAGTGTCCACTTGAATATAACGTTAACAAGAGATCCAAACACGAAGAACTATCACAACGCGAGTAAAGTATGTCAGATTTGCGATAAAATGTTCCAAAACGATTCGGAATTAGAAGAACATCTCTTGTTGCACGAGAAGATGCCCACGCTGGACATCGAGGACGAGGACCACAAAGAGTTTAAACAATATAAATGCGACGCGCATAATAAGACTTACAGGAGTTCTAGGGGCTTGTGGGGACACAACAAAAAGTTCCACCCGGAGAAAATGTCTCGAGAAGATTTCCCTAAACAATGTGACTGTTGCGAAAGAGTTTTAACGACCATGTCCGCGTGGATTATGCACAAGCAAATGCACGACAGAATGAACAGACAAATAGTTGTCAAGCCCGTAGACATGAACGATGACGATTCCGACTATCATACATGCAAGAAGTGCTTCAAAGTATTTGGAAATAAATACAATTTAATGAAGCACATGAGATGTCACGGGGTTTACACTAGTCCGTCGAGGACTTCTATGAAGTCTGGTAAATCCGGGAAGACTTTCTGGTGCAATATCTGCCACCAAGGATGTCCCGGCTTGGAAGAACTCCGAAAACACAAGTTGGAACATAAAAACGAAGAATTATCAGACGCCGACGTCGAAATTGTCGACAATAGAAACATGCAAATAAAGACGGAACCCAACACAAAACCAATCAAACAAGTTTATTGCAAATATTGCAAAATTCCATTCAATTCCGTCGTTGAATTAAACGACCACATGACACTGGAACACGAGGAGAGGAAGAATGTAAAACCGGCCCAGAATTCGAAGAATAAATTCAGTTGCGAATTATGTTCGAAGGTGTTCGCGTCCTCCTCTGCTTTATGCTCCCATCAAGGCTGGCACAAACGCGGCAAAGTCGATAGAGTTTTGAAAACGCAAAAGAAAATGTTCAAAAAGTATGCACACACAGGCCCGATGAAACAGTTTGCAAGATTCAGATGTCCCACTTGTTATCTAACATTCAACGACGACACTTCCCTTCAACTCCACGTTTTGGAAATACACAGAAACATTGCGGCAACAATCAAGAAATTAACGACAAAATGTGCAGCTTGCAACATAGAATTCACCTCACAGGTTGAATTCGAAGCGCACGAGAGAATGCACCACAGATCCAAAGATTTCAAATCCGGAGTCACCTGCAAGTTCTGCCAAAGAGTTTTTAGCAGAAGTGACTACCTCAATCTCCACATCAACAAGAAACACCCGGAAATGTTGAGCTCCGGCTTATTCAAATGCACCATTTGCGACCGCGTTTTCGAGAAGCAAAACGCCCTCAGCATCCATCTCAAAGTTCACGAGCGAGTCGGTGGCAACAGTACCATGGAGCCCATGAATATTTCAAATAACCAACAGCCAAAAACCAACGGCGTTCGCGTCTACAAGTATTCGTGCTCGATCTGCCACATCGGTTTCGACATACCAAAAGATTTGAGGAATCACATAATCAGCAGCCATCCCTTCTGA
- Protein Sequence
- MEEFSPPLQALVGRSHVPSDFLMLSFVDVVLPPSPVLDDVSSAENHSNTSSPVIFYENPEQVAEGRTMKDQEKIDFAAGLCLQSKSAAPKQSQLTKIEQMYLEKCKVMISMFNTNICACHNQKYVSMKQMLGHLRQLYPCFPPYTCYNCLVTFDGRSSKMRHITRCPRLTMESLIRLSELRARTDDKIRLYQNFKCLDCNFLFSFYEDYCDHVDNMHVSDEKPHVCVCQEQFENADLFRQHIHKSCYLNYYCDVCCVLTPSLEEFTQHCEESHDHEEDYTFLAVAPNFITLNNIEIANILLESKETQKAKDEEKARKIEERLAEKGIEFVPILEPAEETFVEPLKVLNPAALFSNKNQRDCGICGKTYSNYHNMIRHLKSFHGIDPNTKASAPICDVCGNEFSSYHNMLRHRKIHESQHSEGTEFNENSEVSITKLSPMKVARSSFRCEECGETFKNAVSLEEHVEEEHTFACAKCGKEFSNPEDLEQHRSVHLNITLTRDPNTKNYHNASKVCQICDKMFQNDSELEEHLLLHEKMPTLDIEDEDHKEFKQYKCDAHNKTYRSSRGLWGHNKKFHPEKMSREDFPKQCDCCERVLTTMSAWIMHKQMHDRMNRQIVVKPVDMNDDDSDYHTCKKCFKVFGNKYNLMKHMRCHGVYTSPSRTSMKSGKSGKTFWCNICHQGCPGLEELRKHKLEHKNEELSDADVEIVDNRNMQIKTEPNTKPIKQVYCKYCKIPFNSVVELNDHMTLEHEERKNVKPAQNSKNKFSCELCSKVFASSSALCSHQGWHKRGKVDRVLKTQKKMFKKYAHTGPMKQFARFRCPTCYLTFNDDTSLQLHVLEIHRNIAATIKKLTTKCAACNIEFTSQVEFEAHERMHHRSKDFKSGVTCKFCQRVFSRSDYLNLHINKKHPEMLSSGLFKCTICDRVFEKQNALSIHLKVHERVGGNSTMEPMNISNNQQPKTNGVRVYKYSCSICHIGFDIPKDLRNHIISSHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -