Patr020445.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000313.1:230884-232152[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.3e-06 0.0017 21.5 2.3 2 23 37 59 36 59 0.96 2 11 0.00019 0.062 16.6 3.7 1 23 82 105 82 105 0.97 3 11 0.027 8.5 9.9 0.9 3 23 115 136 114 136 0.97 4 11 0.0004 0.13 15.6 0.5 1 23 154 177 154 177 0.96 5 11 0.0027 0.85 13.0 1.5 1 23 218 240 218 240 0.98 6 11 2.8e-07 9e-05 25.5 1.6 1 23 246 269 246 269 0.94 7 11 0.0001 0.033 17.5 2.2 1 23 275 297 275 297 0.98 8 11 1.3e-06 0.00042 23.4 0.6 1 23 303 325 303 325 0.96 9 11 2.9e-05 0.0092 19.2 0.3 1 19 331 349 331 350 0.97 10 11 1.8e-05 0.0057 19.8 0.6 1 23 359 381 359 381 0.99 11 11 0.0014 0.45 13.9 0.7 1 20 387 406 387 408 0.92
Sequence Information
- Coding Sequence
- ATGATTCTAAATTGGATGGTGCCAATTCAACAATGTCAATTAAGGCACGATTCTTTTTTCAGAACAAGAACGAATCTGAAAACTGAAGAAACATCAGAACCTCCACTCAAATGCAATATTTGCAACAAAATCTTCAGGCGGCCGACGTTCCTACAAAGACATACCAACAGATTTCATCCCGACGCGGTTTTACGCAACGAAAAATTTGCTAATGTAGAAAGTGATCAAAATTCTATGAAACCACATCAATGTAAAATTTGTAAAAAGGACTTTAGTAATAACTATGTTATGTTGAGACATAGAAGAATTCAGCATGGTTTGGATAACATAAACCCTTCAGCTTGTGAATATTGCGACCATATTTTACAAAATAAGGTGAAACTACGTTTGCATTTGAAAAGTGTGCATGGGGAGAAAATCGTGATGCCAAGGCGGAAACCGGAAGAAATTTTAAAGAAATATTTCTGTGATGTGTGCAACAAAGGGTTTTCCCAAAACGGCGTCATGTTACGACACAAGAGATTGATACATAGCGAAGAAAAGAAGGCAATCAGCGTCAAAGCGACAAAAAAGATAACAAATTTGCAACGGGCACAAAACGTTGAGTTGGCTAGGAGGTGTAAAGTCTTAGGACCTGAAGGTTCCGTTTGTTTTAAATGCGAAACTTGCAGCAGCCTTTTCAAATTCTCTTCCAGTTTAATTTCTCACCAAAGCGTGCACACGGGCGTTAAAAACTTCTTTTGTCACATCTGTGGAAAAACCTTCAGACAATCCAGTGGTCTTAACATTCACATAAACGCTTTCCACAATAAAATTAAGAATTTCCACTGTGACGTCTGCGATATGAAATTTTCCACCAAAGCTTTCCTCGACGAGCACATGAACAAACACACGAACAATCGCCCCTACGTTTGCGACATTTGCGGCAAATCGTTCAAGCAAAGCGGAAGTCTTTACGTGCACAAAATGTTTCACACCGATAACTTCCGGTTTGAATGCAACGTCTGCGGAAAGAAATATCGAAGATCGGCCGAATTGAAGGTTCACAACTGGCTACACACCGGGCACAGACCTTACAAGTGCGACGTTTGCGGAGCCAGTTTTCGAATCGGAACCAGCCTGAAGAAGCATTTGAAGACGCATAACAATAGCAACGAACATTTTTGCGTGGATTGTGGCGCGAGTTTCAGTCGAGAACGATATTTGCTCAAACACAAAGAAAACAACTGTGCTGCCAATAGTGTTGATAAATGTAACGAAGTGTCATAA
- Protein Sequence
- MILNWMVPIQQCQLRHDSFFRTRTNLKTEETSEPPLKCNICNKIFRRPTFLQRHTNRFHPDAVLRNEKFANVESDQNSMKPHQCKICKKDFSNNYVMLRHRRIQHGLDNINPSACEYCDHILQNKVKLRLHLKSVHGEKIVMPRRKPEEILKKYFCDVCNKGFSQNGVMLRHKRLIHSEEKKAISVKATKKITNLQRAQNVELARRCKVLGPEGSVCFKCETCSSLFKFSSSLISHQSVHTGVKNFFCHICGKTFRQSSGLNIHINAFHNKIKNFHCDVCDMKFSTKAFLDEHMNKHTNNRPYVCDICGKSFKQSGSLYVHKMFHTDNFRFECNVCGKKYRRSAELKVHNWLHTGHRPYKCDVCGASFRIGTSLKKHLKTHNNSNEHFCVDCGASFSRERYLLKHKENNCAANSVDKCNEVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -