Patr015285.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000228.1:285869-297890[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.79 2.5e+02 5.2 0.1 2 23 189 211 188 211 0.93 2 13 1.2 3.8e+02 4.7 0.3 3 23 219 236 219 236 0.80 3 13 0.0034 1.1 12.7 9.1 2 23 240 261 239 261 0.97 4 13 0.00044 0.14 15.5 5.3 1 23 267 289 267 289 0.96 5 13 2.6e-06 0.00084 22.5 0.4 1 23 295 317 295 317 0.98 6 13 2e-07 6.5e-05 26.0 1.2 3 23 385 405 384 405 0.99 7 13 3.2e-05 0.01 19.1 3.2 1 23 411 433 411 433 0.99 8 13 1.9e-06 0.00059 22.9 0.8 1 23 439 461 439 461 0.97 9 13 2e-06 0.00063 22.9 1.7 2 23 467 488 467 488 0.97 10 13 0.00064 0.2 15.0 7.4 1 23 494 516 494 516 0.97 11 13 3.6e-07 0.00012 25.2 1.6 1 23 522 544 522 544 0.98 12 13 0.00039 0.12 15.6 4.6 1 23 550 572 550 572 0.98 13 13 0.00028 0.089 16.1 0.5 1 23 583 606 583 606 0.95
Sequence Information
- Coding Sequence
- ATGTCACGAGTATACAGAGAAGCCATAGAGATAGAAAAACTAGACTACTGCATGAACACGAGAGACGATTCCTTGAGACTGCCCCCAGCATGGCGACCGATCATATCCACCCTCAAAATGCAATCCCAGACACCCCAGACTCATGTACGACCAACAAAACAAACAAACAACCGAACCGAAGCACCGCACACAACACGCATGACCCGAAGCCAGACAGCTATAAGTAGTCGCATCGAACGAGCTCTCAGTATGCGTTTGTCAATAAATCATGATTTTCCATTCAACATTTGCAATTTTTGTGAAGAAAAACTTCAAACGAGCTTCAACTTCCTTGAACAATGCAGGAATTCTCACGATCTCATCCGGCAATACTTCACTAAATCAGCCGAACAACATGTTGAAGAATATTCACCGAGTAATATTGAAATGACAATTCAGGAAGATATTGAAATGCCGGTGGAGGAAGAAACTAACAAAGATAAATGCAAACAGAGACTTGAACAGTTTCCATTTGAAACTGTAAATGAGGCAATTCAACAAACCGATGATCAGCTCAAGAAAATTGAGTGCTTCAAGTGTGGATTTGAGGCAGTTAATACTAAAGCTCTTGCCGTTCATATCTCACATATACATAAGGATTTGAAGGAGAGTTGGTGTCCACAATGTAATCAAGTGTTTGACAACCTTATTGAACATTCCAAAGAACATGCAGAAATAACATGCAAATTTTGTCAGAAGGTCTTCCATTCGAAATGTCACCTCAAAGAACACCTCCGAAGTCATTCTGGTATTCGCCCATACAACTGCAATACCTGTGAGAAATCATTTATAACATCACGACACTTGAGGGCTCACTGCCGAATACATGCCAACGAGAAGCCCTATTCTTGTCAAATCTGTGGAAAGGCTTTCGTGCAATATGGATCATTGAAATTGCACCTCAAACAGCATAACCAAACTGAACCAGAACATGGAATTGTCTCTGAGGAGAAAGCTGTATTGGATTCATTGATAAAAGTGGAAGAAAAGCCAAAAATATCAAGCATGAGAAAACAGAATTTCTGTGAGATTTGTCATAAGAAAGTCAGAAGCTTGACAACACATAACAAGAAAGAACATGGGGAAGGGGGCGGAGACGAAAGCTTGAAACTCTGCACAGTTTGTGGAAAAAGATTCAAGACGAATAGTAAGTTAAATATTCACATGAGAATACACACAGGGGAATCCCCATATAAATGTCATTATTGCGAAAAGCGGGTTACTACAAGGAATCAACTGGTTGTGCATGAAAGGACCCACACAGGAGAGAAACCCCACGTTTGTTACGTCTGTGGAAAGGCTTTCGCCCAATCGAGTGTTTTAAAAACGCACATGAGACTGCATACAGGTCGACCGGAAGTTTGCACAATCTGTGATCAAAGGTTTTGTCGGCCTGCAGAGCTCCGCCTACACATGAGGAAACATACTGGTGAGAAACCGCACCATTGCACCACTTGCAGCCAGTCGTTTTCCCGCCGCAGCCACCTAATGGAACACGTCAAAATCCACAGCGACGAGCGGCCCTACAAGTGTTCCTACTGTGGTCGGGGCTTTAAGCAGAGTTCTTCGCTAAAAACACACGAGCAAATCCATTCGGGGGAAAAACCGTTTCAGTGCAGCCAATGTACCTATGCCTGTCGACAAAGCTACAGCCTAACTTTGCATATGAAACAGCACGTCGAGGATTTACCTAGGCTGGATCGTCCATACTCCTGCTTGATTTGTTTGAAGACTTTCACTACGAACGCCATGCTGAATTCGCACAGTCTCAGAGTTCACATGGATGGTCAATATTGA
- Protein Sequence
- MSRVYREAIEIEKLDYCMNTRDDSLRLPPAWRPIISTLKMQSQTPQTHVRPTKQTNNRTEAPHTTRMTRSQTAISSRIERALSMRLSINHDFPFNICNFCEEKLQTSFNFLEQCRNSHDLIRQYFTKSAEQHVEEYSPSNIEMTIQEDIEMPVEEETNKDKCKQRLEQFPFETVNEAIQQTDDQLKKIECFKCGFEAVNTKALAVHISHIHKDLKESWCPQCNQVFDNLIEHSKEHAEITCKFCQKVFHSKCHLKEHLRSHSGIRPYNCNTCEKSFITSRHLRAHCRIHANEKPYSCQICGKAFVQYGSLKLHLKQHNQTEPEHGIVSEEKAVLDSLIKVEEKPKISSMRKQNFCEICHKKVRSLTTHNKKEHGEGGGDESLKLCTVCGKRFKTNSKLNIHMRIHTGESPYKCHYCEKRVTTRNQLVVHERTHTGEKPHVCYVCGKAFAQSSVLKTHMRLHTGRPEVCTICDQRFCRPAELRLHMRKHTGEKPHHCTTCSQSFSRRSHLMEHVKIHSDERPYKCSYCGRGFKQSSSLKTHEQIHSGEKPFQCSQCTYACRQSYSLTLHMKQHVEDLPRLDRPYSCLICLKTFTTNAMLNSHSLRVHMDGQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -