Patr045734.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000793.1:213679-219805[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0083 2.7 11.5 0.1 2 23 303 324 302 324 0.96 2 12 0.017 5.3 10.5 0.3 2 23 327 349 326 349 0.95 3 12 6.5e-07 0.00021 24.4 1.0 2 23 407 428 406 428 0.97 4 12 0.0002 0.062 16.6 0.4 1 23 434 456 434 456 0.97 5 12 0.029 9.1 9.8 1.3 1 23 462 484 462 484 0.92 6 12 2.4e-05 0.0076 19.5 2.0 1 23 490 512 490 512 0.98 7 12 3.7e-05 0.012 18.9 1.1 1 23 518 540 518 540 0.98 8 12 3.8e-07 0.00012 25.1 2.3 1 23 548 570 548 570 0.98 9 12 0.0027 0.86 13.0 0.2 1 23 576 598 576 598 0.96 10 12 2.2e-05 0.0071 19.5 1.3 1 23 604 626 604 626 0.98 11 12 6.1e-05 0.019 18.2 0.5 1 23 632 654 632 654 0.98 12 12 5.8e-05 0.018 18.2 1.5 1 23 660 682 660 682 0.98
Sequence Information
- Coding Sequence
- ATGCCAGTAGATGGCGCTGTGTGCATTACATTGGTGTCAACCACTGAAATATATACTAACTGGAACGAGCGCTGGCCTCTAAGCTTGTGCGGGCCGAGAGAGAGGTCTCAAGGGGTCCCAAGGGGAATTCACGAACGTGATGAATTGCCAAAAATAATCTGTGAAAATTGTCTATTGAAACTAGAAATAATGTTTGAGTTCCGTGAACGTTCCCTTCGCACAGAGAGTTTACTCGTCGATCTATTCAAAGAACTGAACGCAATACAACTTCAAGTCGATCATCAAATGAAACTTGACGTTGTACCCTTGGAACATTCAGATATAGTTATGGTCCCACATCACCAAACTCTCCTGACTGATCATGGAATTCCTCATGTGAATGAACTCGATTTGGCACACTTAACACACCGAGCAAACTTGATTGTTGGTCATGAGATAATCATGGGTCATCAAAATGTATCATTTGAAAACATAGAGTTAACTAATCATGAAATAAATCAGGAATTATCTAATCACAGTATGCCAACTGGAGAGGGGATCTTAGTGGAAAATCATTTGCAGAATGGAAGATATATCGAAGATCTTGATTACAACTCAGGACATCAAATGTTAAATGAACAATATAGTTTGAATGATATTACATTAACCGAAAGTAGTTTACAATCTCAGGAATGTGTTAAGGATAATATTCATATTGAAGAACACAGTATGAAAAGTGACTCACAGGAAAGTAATCACACAGAGAGTCATAAATTTATTCAAATGAGTGTATCACAAATGAAGCAAGTATTAGTGAAACATGAAGATAGCAATAACAGTGAAAATTGTCTTTTAATTGATGAAAATAATATGGAAAAGAATGTAGAACTGAGAACTAATGTCAGTCAAGCAAATCAAGAGTGGATTTATTGTAGTATTTGTGGAAGTTCTTATGAAGACAAAATACAATTTGAAGAACATTATAATGAACATTTTAATAAATGTAAAGTTTGTTCATCAGTTTTTCAAACTGAAGAGGCATTAAATGTGCACAGAAAAGAGGTGCATGGTGATAGTACAGAAGCTGAAAAGGCGGATAAGGAAATTAAGCAAAATATTAATGAAAAGGAAATTAGTGATTTTGAAAATAGTATTGAACTTGAAGGAAATGATCCTTTAGAATATGAAGAACCAGCTGAAGCTATAAATAATTCAAAGAAACGGAAATGGAGTCCAAAAGTTTGCAAGGAATGTGGAAAAGTATATAAAACGAATTATAAATTAGCAGAGCATATGAGGAAACACACTGGGGAACAACCTTTTAAATGTCAGAGCTGTGATAAGGCTTTTAGGTCTAAAATTGGTTTGGCTCAACACGAAGCCAAACATACAGGTCAATATGATTATGCCTGTATTACTTGTGGCAAAGGATTCCAATGTAAAAGTTATTTAATGGTTCATCAGAGAGTTCATTCGGACGTAAAACCTTTCCCGTGTACAACTTGCGGCCGCAATTTTAAATCAAAAAAATCTTTATTGGACCATACAAACAGACATTTGGGAGTTAAACCTTACACTTGTGAAATTTGTGGAAGAAGTTTTGTTACAAATGgtttgtgtaaagcccaccaaaaagtgcactctgggactgataacagaaagtattcttgtaaagtttgcaataaaaagtttgtttctaaaagttatttacaaacacatctaagaatacatacaggggaaaagccattcatgtgtgaggtttgcggaaaaggttttttaaccagagttgacctaagggttcattctactatgcatactggagagaaagcttatgtctgtgaaatgtgtggcaaagcatttgcaagaagagatgccctacgatgccatagaaggtctcatactggcgagagaccttatagTtgtgatatttgtggacaaacatttacccagtattcaccaatgtctatacatagacgtttgcacactggagaacgtccatacgaatgcgagacgtgcggtaaaaggtttgtgtcacgatcgactatgatgttacattccaagaaacacACTAGGTGA
- Protein Sequence
- MPVDGAVCITLVSTTEIYTNWNERWPLSLCGPRERSQGVPRGIHERDELPKIICENCLLKLEIMFEFRERSLRTESLLVDLFKELNAIQLQVDHQMKLDVVPLEHSDIVMVPHHQTLLTDHGIPHVNELDLAHLTHRANLIVGHEIIMGHQNVSFENIELTNHEINQELSNHSMPTGEGILVENHLQNGRYIEDLDYNSGHQMLNEQYSLNDITLTESSLQSQECVKDNIHIEEHSMKSDSQESNHTESHKFIQMSVSQMKQVLVKHEDSNNSENCLLIDENNMEKNVELRTNVSQANQEWIYCSICGSSYEDKIQFEEHYNEHFNKCKVCSSVFQTEEALNVHRKEVHGDSTEAEKADKEIKQNINEKEISDFENSIELEGNDPLEYEEPAEAINNSKKRKWSPKVCKECGKVYKTNYKLAEHMRKHTGEQPFKCQSCDKAFRSKIGLAQHEAKHTGQYDYACITCGKGFQCKSYLMVHQRVHSDVKPFPCTTCGRNFKSKKSLLDHTNRHLGVKPYTCEICGRSFVTNGLCKAHQKVHSGTDNRKYSCKVCNKKFVSKSYLQTHLRIHTGEKPFMCEVCGKGFLTRVDLRVHSTMHTGEKAYVCEMCGKAFARRDALRCHRRSHTGERPYSCDICGQTFTQYSPMSIHRRLHTGERPYECETCGKRFVSRSTMMLHSKKHTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -