Patr115492.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- su(Hw)
- Assembly
- GCA_944567605.1
- Location
- CALYMX010004086.1:48153-64521[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.3e-06 0.0026 20.9 0.7 3 23 327 348 326 348 0.96 2 13 0.0022 0.71 13.3 2.2 2 23 381 403 380 403 0.94 3 13 0.087 28 8.2 2.1 1 23 410 432 410 432 0.99 4 13 0.0063 2 11.8 1.3 1 20 438 457 438 459 0.94 5 13 3.8e-07 0.00012 25.1 4.0 1 23 470 492 470 492 0.98 6 13 0.00032 0.1 15.9 0.2 1 23 502 524 502 524 0.98 7 13 5e-05 0.016 18.4 0.8 1 23 530 552 530 552 0.96 8 13 0.00088 0.28 14.5 1.3 1 23 558 580 558 580 0.97 9 13 2.9e-06 0.00094 22.3 2.6 1 23 586 608 586 608 0.96 10 13 3.1e-05 0.0099 19.1 0.9 1 23 614 637 614 637 0.95 11 13 2.5e-06 0.00081 22.5 0.2 2 23 644 665 643 665 0.95 12 13 4e-05 0.013 18.7 0.3 1 23 671 693 671 693 0.98 13 13 5.6e-06 0.0018 21.4 4.1 2 23 700 722 699 722 0.95
Sequence Information
- Coding Sequence
- ATGCTTGAATCTTGGGTAGAGATAAAGGAATGGGACGACATTAAAAACAATCTGCCTGGTGAATATAGATGGAAATTTCAGAGCGCGCACAGATTAACAAAGATGGGGCGAGCAAAAGGAGGTATTGTTACCGGTGTTCATAAGATAGTAAGAGAGTGTTATTCCAAGAGCTGGTACGACCAGGAGTTCAGCCTCGTGAAAAAGAAAGCCAGAGAGGCATTTAAAAAGTGGAAAGAAGGGAATTATACATATGTGCAGTTTAAGGAACTTATAAAGGAAGCTAAAGAGGTAGATCTAGGAAAGGAAAAGGAGAAGCTATGGCAAGAGCAGCAAATGGCGAGGGTTCAGCAGCTGAGCAGTGAGGCAGAGATATGGAAATACCTAGCATCGAGGAGGCAGAAATATAACCAATTCATCAGAGATATTCCCATAGTCCGATGGAAAGATTATTTTGAAGGTATTCTAGGCAACGAGATGGGAAAGGAGCTCGATGAAAAAGTTGAAAGGATGGTACAGGGACCAGGGCAAGATGAAATATCTTATGAAGAACTAGAGTTTGTCCTCCGGACAATGCAGCAGTGCAGAAAGGGGCAGGAGGTACTGGATGACGCCAAACGAGAGAACCTGCCGTATATGTGGGACGAGCATAGAAAATTGGGAGCATTGAGAGATTATGATCCGGATGCCACCACTCAGCACATGATAATAACGGAGGAGGGAGCGGCCTTCCTGCAAAGCGGACATGAGTTGTACGTAGAGGAGGAGCACGAGTACGAGGTGGAGGAGGGCCAGGAGTACCAAGAGTACGAGGAGGCTCAGTTCGTCGAGTCGGAACAGGGTTACACGGAGGACGACAACGAGGACAGCCAGGACGTCTACGATGAGCAGGATATGGATCAGGATGAGGACGTGGTGGAGGACGATCCCGATTCTGATCCGGACTTTGATCCAAACGTGCACGAGCAGGCGGAGCCTGCTTGTAATATTTGTGATAGGACGTTTAAGACTACTGCTAGCCTAAAAAGGCACATCACCGTTACACACGGCCAAGACGAAGACCGCACTGATGATCCATTGGCTTTCGAACTCTGTGCCTGTTGCGGAGAGCCCAGCGACTCCGCCCACACGTCTGGAACGGTAAAATGCGACCACTGCGAAAAGCTCTTCGTCTACCACAGCAACATGATCAGGCACATAACGCTCGAGCATCCGGACGACAACGGCATGTACAAGTGCTGCGACTGCATACAGGCCTTCCCCTCCCACGAGGCCATCCTGAAGCACATGCAGTCTCACCCGTTGGCCAAGCCTTTCTCCTGCAAGCCCTGCAACCGAGACTTCACCCGCAAGTATCATCTGGATAGGCACGTTGCTCAAACCGGATGCGATGGACAACCTAGAAAACAGTATAAGTGTCAAGTGTGTCAGAAATGTTTTAGCCGGAAGGACAATCTGCGAGACCACCTCAGGGCCCATGCTGGGCAAATCAAGAAGAAGAAAATCTATCCGTGTTCCTACTGCAAGAAGGAGTTTCAAGGTTCCGCCCTTCTGGGAATACATTTACGAACACACACAGGTGAAAAGCCTTATCTGTGTGATTTATGTCCGAAGAAGTTTCCTTCGAGCGGAGCCATGAAAAAACACCGGCGGAGACACACCGGAGAAAAACCGTACCAATGCATACAGTGTAAGAGAAGATTTGCAGCGAAGGAGACGTTAAATCGTCACGTTCGTACCCACACGGGGGATCGACCCCACCAATGCACCTACTGTGGGAAGTCCTTCATCCAGGCCGCGCAGCTCAGAGCCCACATTTTCCATCACACTGGAGAGAACGCCTTCACCTGCCCGGAGTGCAACAGGGCCTTCAACAGGAGGGTGCGTTTGACCACACACATCAAGTTTGTTCATCAGGGGGCACAGCCAATGACTTGTCCAGACTGTGACAAGACGTTTTACAGGAAAGAGGACTTGGCCAGGCATGCCCTTCTACATTCCGGAGAAAAGCCATTCCAGTGCGAGGTGTGTCAGAAACGTTTCGCCGTGAAAGCCTCGCTGAAGCTGCACGCGCTGACCCACCGCAAGGAGCAGCCGTGCTCGTGCGACGAATGCGGCCGTGCCTTCATCCGGCAGGACTGCCTGATGCGCCACATGCGCTCCAAGCACCGCGACGTCCTCGAGGACATCCTCGCCGGCGCGGAGAAGAAGCGGCTGCAGCAGCAGCTGCTCACCGCCGCCTCCGACGCCGCCACCAACTGCAAGAAGGAGATCATCGACTCCAACATCTGGAACGAGCTCACGCTCACCGACTCCATCAAGGAGCTGCTCAGTCTGCTCGTCGACGAGAAGACCCTCAACGGGTTCGGCTGGCCCGAGGCGCCGGTCGACAAGATCTTGGACTTGGTCATACGCCGATGCGGACACGAGCCCGCCTCCGGCGACGACTTCGACTACATCAGTCGGATGAGGGAGAACGCAAAGCTGCTCTTCACCGTCGTCATCGACGACCAAGCTGTTAAATCCCTGCTGAACAACCAAACCGTTGACGAGGTCATACAGCATGTCCTACGATTAGCCAAGAACGAATAA
- Protein Sequence
- MLESWVEIKEWDDIKNNLPGEYRWKFQSAHRLTKMGRAKGGIVTGVHKIVRECYSKSWYDQEFSLVKKKAREAFKKWKEGNYTYVQFKELIKEAKEVDLGKEKEKLWQEQQMARVQQLSSEAEIWKYLASRRQKYNQFIRDIPIVRWKDYFEGILGNEMGKELDEKVERMVQGPGQDEISYEELEFVLRTMQQCRKGQEVLDDAKRENLPYMWDEHRKLGALRDYDPDATTQHMIITEEGAAFLQSGHELYVEEEHEYEVEEGQEYQEYEEAQFVESEQGYTEDDNEDSQDVYDEQDMDQDEDVVEDDPDSDPDFDPNVHEQAEPACNICDRTFKTTASLKRHITVTHGQDEDRTDDPLAFELCACCGEPSDSAHTSGTVKCDHCEKLFVYHSNMIRHITLEHPDDNGMYKCCDCIQAFPSHEAILKHMQSHPLAKPFSCKPCNRDFTRKYHLDRHVAQTGCDGQPRKQYKCQVCQKCFSRKDNLRDHLRAHAGQIKKKKIYPCSYCKKEFQGSALLGIHLRTHTGEKPYLCDLCPKKFPSSGAMKKHRRRHTGEKPYQCIQCKRRFAAKETLNRHVRTHTGDRPHQCTYCGKSFIQAAQLRAHIFHHTGENAFTCPECNRAFNRRVRLTTHIKFVHQGAQPMTCPDCDKTFYRKEDLARHALLHSGEKPFQCEVCQKRFAVKASLKLHALTHRKEQPCSCDECGRAFIRQDCLMRHMRSKHRDVLEDILAGAEKKRLQQQLLTAASDAATNCKKEIIDSNIWNELTLTDSIKELLSLLVDEKTLNGFGWPEAPVDKILDLVIRRCGHEPASGDDFDYISRMRENAKLLFTVVIDDQAVKSLLNNQTVDEVIQHVLRLAKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -