Patr027414.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000436.1:57587-64752[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.065 21 8.6 2.6 2 23 146 167 145 167 0.96 2 16 0.00023 0.073 16.4 5.3 1 23 172 194 172 194 0.98 3 16 1.8e-05 0.0059 19.8 3.0 1 23 200 222 200 222 0.98 4 16 0.0032 1 12.8 3.2 1 21 228 248 228 249 0.94 5 16 0.00026 0.083 16.2 1.5 1 20 256 275 256 278 0.93 6 16 0.0011 0.35 14.2 0.5 1 23 446 468 446 468 0.94 7 16 7.4e-06 0.0024 21.1 4.5 1 23 474 496 474 496 0.97 8 16 1.2e-05 0.0038 20.4 5.4 1 23 502 524 502 524 0.98 9 16 9.6e-06 0.0031 20.7 3.2 1 23 530 553 530 553 0.96 10 16 0.022 7.1 10.1 2.5 1 23 565 587 565 587 0.93 11 16 0.00052 0.17 15.2 7.2 1 23 593 615 593 615 0.97 12 16 2.9e-06 0.00091 22.4 0.5 1 23 622 644 622 644 0.96 13 16 3.7e-06 0.0012 22.0 1.2 1 23 650 672 650 672 0.98 14 16 1.8e-06 0.00059 23.0 0.5 3 23 680 700 678 700 0.96 15 16 2.7e-05 0.0085 19.3 0.1 1 23 706 728 706 728 0.99 16 16 0.15 47 7.5 0.4 1 23 733 756 733 756 0.96
Sequence Information
- Coding Sequence
- ATGGACGCGATATCGTTAGATTTCAGCCGCATCTGTCGTGCATGTAAATGCAAATCGGATAATATGCGGCAGTTGTTTGAAAATTCCGACAACGAACCTGATAGCACCCGTATTGACGAGATGCTAATGGCATGTGCCTCCGTGCAGGTGAATCCTGAGGATGGTTTACCTAACATGATTTGTTTAAAATGTATAGAGCAACTGAAATACGCATTTTCCTTCAAAGTGCAATGTGAAAAGTCTGATGCAAGTCTAAGAGAATACGCGAAAAACCTTAAAACAATAGAAACCGATGAAGACTTAACTAACAAACTAATAAATGATTTAGAAAACATTTTTGACCAATCTAAATTAGAAACTGCAGATAGTCTTGCTGTGGCTTCTGTTGAAAAATGTGATTTTATTGAAATACTAGACAACAGGCAAATGATTTTAACTTGTCGAGAATGTTACAAAATCTTTACATCTCTTGATGGTTTAAGGTGCCACAAAAGAATACACACAGGGACATTATTCAAATGCAAATTTTGTGATAAAGGTTACACAAGAACAAATCATTTAAAAAGACATGAACTATCCCACGGAAGACGGAAAGTATATATTTGCAAAATTTGTAACAAAACTTTAACAAGATATGAACATTTAAAACGGCACTTAGTAACACATTTAAAGAAAAAACCTTTTCATTGTGTAAAATGTAATCACGGATTCACCAGGGCTGAACATTTAATACATCACATTGAAAAATGTAAAGGTGATAGAATTCATATTTGCGATATTTGTAATAAAGCATTTAATAGGGCAGATAGTTTGGAAGTTCATAGACTCTGTCATGATAATAAATCACCTATTTTACTAACTTTGGAGAGTATAGAAAATGTTGATGAGCATTATATTGAATTGCAAAATGATGTGGCTGATCTCACTCAGTTAGATTTTGCTGATGAAGATGATGATGATGATAATGATATAGGAGGAGAATTGGATGATTACTTTGAACCACAAGTGAACATAGAAGAAAATGCAATTAGTCAAGTAGTACAAGAAGAGGCAAAATGCCAAGAAAATGAGGAAGGTATAACTAAAACAGAAGATATTTGTGATGAAGAATTGGATACTAAGTTTAGTTTAGAATTTGCAGATGACGCACGTTCAGATTTTTCAGATGGGGATTCTGATTATAAACCTTCCAAATCTATTAATGTTAAAAGAGGAAGGGGAAGACCCAAAAAGTCTGGAGCAACAACAAAAAATTACCCTGGTAAACGAGGACGATCATCTACAACAGTAAAAGTCGAAATTAAAGAAGAAGATGTAGATGAAGAGGAAGGAGAACATCCTTGTCCAATTTGCAATGAAATGTTCAACAAATTAAGTTTGCTAGATAAACATGCTACCCAACATAATGGAGATAAAATTTTCCAATGCAAGGTTTGCAACAAATCGTTTTATCGTTCCAATCACCTTAAAAGACATGAAGCTTCCCACTCCATAGATAAACCATTCACTTGTGAAATTTGTACCAAAGGCTTTAACAGAAAAGACCATCTTCACCAACACATGAAACTACATTCAAGATCGCAAGAATATGAATGTGATACCTGCAAGAAAACATTTGCACGTGCTGACCATCTCACAAAACACAAACTCTCGAAGCACAACCAAGGAGAAAGAGTGATTGGCGAAAAGAAATTTAAATGTACAGTGTGTGACAAATATTTCACAACTGAAAAATACAGGGACATTCATAAAAAGGCTCACAATGGGGAGAAGAAGCACCAATGCAAAACATGTGATAAAACGTTTTTGTCCAAGTCACATTTAACTGAACACATGAAGTTCCACAATGAGAAATCAAAGAAGTTTTTGTGTTCAGAGTGTGGGCAAAGGTTTATTAGGAATGATTATTTGGTTATACATATGAGGAGGCACAGGGGAGAAAAACCCTTTAAATGTAAATATTGTGGGAAAGGTTTCCCAAGAACAACAGATTTGACTGTGCATGAAAGATATCATACTGGAGAAAAGACTCATTTATGTGTGATTTGTGGTCGAGGATTTGGAAGAGCATACAATCTTACAGTTCACATGAGAACACACACAGGGGAAAGACCATATCAATGTACTTATTGTGATGCAGCTTTTGCTCAAGGGAATGACCTCAAGGCACATGTTCGACGGCATACTGGAGAAAGATTTCAGTGTGAACTGTGCACAGAAAGCTTCCTTATGGGATACCTACTTACTCAACACAAACGTGTTGTGCATGGAGTCGGCGAGTCCTCTTCTGTCCCGGCAAGACTGACGTGTTCCTCTACCTCAGTAAACCGGGCAGAACTGCTCATGTCTACTCATGTGACTAGACCTCACATGCATAGACATGAGCAGTCGTCCTTTCGGCCATTCGATCAGAATTCCTCGTTCTCGACCATTGTGGCTTCAACAGAGTGGGTGGCTGCTGTTGCTGTCTCCTCAACCAAGGGCTTGGCCCCTATTGTTGTCGTAACTCCCGATGGAGATACCCCTGTAGCTACCattggatcaactggaccagatggagctcaagctccatctggtccgctagttctgtggcagtga
- Protein Sequence
- MDAISLDFSRICRACKCKSDNMRQLFENSDNEPDSTRIDEMLMACASVQVNPEDGLPNMICLKCIEQLKYAFSFKVQCEKSDASLREYAKNLKTIETDEDLTNKLINDLENIFDQSKLETADSLAVASVEKCDFIEILDNRQMILTCRECYKIFTSLDGLRCHKRIHTGTLFKCKFCDKGYTRTNHLKRHELSHGRRKVYICKICNKTLTRYEHLKRHLVTHLKKKPFHCVKCNHGFTRAEHLIHHIEKCKGDRIHICDICNKAFNRADSLEVHRLCHDNKSPILLTLESIENVDEHYIELQNDVADLTQLDFADEDDDDDNDIGGELDDYFEPQVNIEENAISQVVQEEAKCQENEEGITKTEDICDEELDTKFSLEFADDARSDFSDGDSDYKPSKSINVKRGRGRPKKSGATTKNYPGKRGRSSTTVKVEIKEEDVDEEEGEHPCPICNEMFNKLSLLDKHATQHNGDKIFQCKVCNKSFYRSNHLKRHEASHSIDKPFTCEICTKGFNRKDHLHQHMKLHSRSQEYECDTCKKTFARADHLTKHKLSKHNQGERVIGEKKFKCTVCDKYFTTEKYRDIHKKAHNGEKKHQCKTCDKTFLSKSHLTEHMKFHNEKSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCVICGRGFGRAYNLTVHMRTHTGERPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRVVHGVGESSSVPARLTCSSTSVNRAELLMSTHVTRPHMHRHEQSSFRPFDQNSSFSTIVASTEWVAAVAVSSTKGLAPIVVVTPDGDTPVATIGSTGPDGAQAPSGPLVLWQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -