Patr058650.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010001059.1:21568-27591[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.049 16 9.0 0.8 2 21 33 52 32 56 0.88 2 17 0.00067 0.21 14.9 0.4 1 20 59 78 59 79 0.94 3 17 0.0016 0.5 13.7 2.8 1 23 87 109 87 109 0.96 4 17 2.5e-06 0.00079 22.5 0.4 2 23 116 137 115 137 0.98 5 17 5.5e-05 0.018 18.3 1.6 1 23 209 231 209 231 0.97 6 17 4.1e-07 0.00013 25.0 1.0 2 23 237 258 236 258 0.97 7 17 2.8e-07 8.8e-05 25.5 1.0 1 23 262 284 262 284 0.98 8 17 1.8e-06 0.00058 23.0 0.4 1 23 357 379 357 379 0.97 9 17 0.00045 0.14 15.5 1.8 1 20 387 406 387 408 0.93 10 17 0.0015 0.48 13.8 4.1 1 19 442 460 442 464 0.93 11 17 0.00026 0.084 16.2 0.9 1 23 469 492 469 492 0.93 12 17 3.7e-05 0.012 18.8 0.9 1 23 498 520 498 520 0.97 13 17 0.00016 0.051 16.9 2.3 1 23 526 548 526 548 0.99 14 17 0.00016 0.05 16.9 0.3 3 23 556 576 554 576 0.97 15 17 0.011 3.5 11.1 1.2 1 21 582 602 582 605 0.94 16 17 0.13 42 7.7 0.7 1 23 617 639 617 639 0.96 17 17 2.2e-06 0.0007 22.7 0.4 3 23 668 688 666 688 0.96
Sequence Information
- Coding Sequence
- ATGGCAGTTGAAGCTTTAAGACAACTAGGAAATTCGTTGTATTCTTCAGTAAACTGCCGCATTGAAACAAAAACGCCCCATGACCTTCCTCTACTGCCATGCTTGAATTGTGACATGCAGTTTCGCACAACAGCAGATTTAAACAGCCATGAGGAAATCTGCAAACACACTCAATACCTCTGTTCAATTTGCACAAAAACCTTTTACCGCAAATTGGATTTGAACAATCATCTGGTTTGCCATGCTGTTGAACGACCACATGCTTGTCGCATTTGCAGCACTCTCTTCGTCCACAAAAATGATCTTCAGCAACATATGGCAACGCATGGCAGTGACATTGTTAATCAATGCCAGATTTGCGGACAAGTTTTTACTCGGGGGTCAAGTTTGAGTAACCACATGAAGATTCATAGTTACCAAACAGAAAGGAATGTTGATCCTAAAATTGAAGGGAATCTTGAGTTGGTTGATATGTTGACGACAGAAATTACTGAAACAAAGGGTTTGGAGAATGTTGGGGAAGATAGTCAGTGGAATGTTTATTGTGAGACTGAGTTGACTCCAGAAGATAATGAGGATTTGGAGGTTGATGGGGATGTTGTAATTGCTTCTGAAGTTAAAACTTTCCCATGTGGGCAATGCGATAAATTCTTTAATTCAGCAAAGTCTTTATGTTCCCATCAAATTGTCCATGGCGAAAAACCCCAAGTATGCCCCATATGCAATACTTCCTTTTCAAGAAAACAAGAATTCAAACGACATATGGCTACCCATAATGTTTTATATGACTGCACTATTTGTGGCACAGTTTTTCACAGACCATCTAGTTTAACTAACCATATGAAAATCCATAATTATCCTTCAAAACGTCTTGCTAGCAATCAAAAAATTGAGAATAATATGGAACTCACTGAAATTTTAACCAGAGATGAACCTGAAAAAGTTATTTTACCCAGCATAAACAGCATGACTTCGCTAAACTGGAATTTTTACTATGAATCTGAAGGAATGAACTCTGAAGCTTTAAACGAAACCAACAAAACTGTTCCAAAAAAAAACAAGAAACCTTACTCATGTCCAAAATGTGATAAAACATTTGCAAGGGAAAAGGCTTTGAAATCCCATTTGATTCTCCATGAGGACGTTCTTGAAACATATTTTAATTGCACTAAATGTGAGAAGACTTTCAATGACGATTCTGATTTAAAACACCATGAGAATCAATGTGTGAAAAAAGCGGCGAAAGTGGAACAGGTGAAACAAGCGACTATTTCAAGGGTAGTTTCTGGAGATGGCGAAGTTAAGCGCGGGGTATGGTTCAAGCATGAGTGTAAGGATTGTGAGAAGAGGTTTAATACGAAGCAGAAGTTATTTCGGCATTCATGGACGCATCGGGCGAAAACGTTTATTTGTGAGATTTGCGCGAAGAGTTTTAAAAAACAGGAATCGTTGCATTCGCATCGGTTGGCTGCCCATCAGTCCGATTCGCAGCATATTTGCTCGGAGTGTGGGAAAAATTTCGCCAGTCGACAAGGTTTGTGGGAACATCGCAAAATGCATTCATTAGAAACAATTTACAAATGTTTGGAGTGTGAGAAAACCTTCACCAGTCGACAAGGCTATCAAATCCACAACCGCAAGCATCGTGACGAAAGACCCTACGGCTGTTCATACTGTTGGAAAGCTTTTCGAGATGGTGGAACCCTTCGAAAACATGAGAGGATCCACACTGGTGAACGACCACACGCTTGTCCATTATGCGCCAAGGCTTTCAATCAGAAAGTTGTGTTAAGGGAGCATATTAGATGTATGCATGTGGCTAAAATGAATCCGGAAGAAGACGATGTTTTCATTTGTAGAATTTGTCAGGAGAAAATTGTGGAAAAGGATGATTTGTGTGCGCATTTTATTAAACACAGCGATTGCATGGCTCGAATTGCTAAAAACGCTTCGAAGAATAACATCATTAATTTGGAGGAATTTGGTAAAGAAAAATTAGATTGTGATTTGTGCGGAGAAACGTTTAGCAATAAAGACGAACTTCACGAACATATTCGGATTCATATATAG
- Protein Sequence
- MAVEALRQLGNSLYSSVNCRIETKTPHDLPLLPCLNCDMQFRTTADLNSHEEICKHTQYLCSICTKTFYRKLDLNNHLVCHAVERPHACRICSTLFVHKNDLQQHMATHGSDIVNQCQICGQVFTRGSSLSNHMKIHSYQTERNVDPKIEGNLELVDMLTTEITETKGLENVGEDSQWNVYCETELTPEDNEDLEVDGDVVIASEVKTFPCGQCDKFFNSAKSLCSHQIVHGEKPQVCPICNTSFSRKQEFKRHMATHNVLYDCTICGTVFHRPSSLTNHMKIHNYPSKRLASNQKIENNMELTEILTRDEPEKVILPSINSMTSLNWNFYYESEGMNSEALNETNKTVPKKNKKPYSCPKCDKTFAREKALKSHLILHEDVLETYFNCTKCEKTFNDDSDLKHHENQCVKKAAKVEQVKQATISRVVSGDGEVKRGVWFKHECKDCEKRFNTKQKLFRHSWTHRAKTFICEICAKSFKKQESLHSHRLAAHQSDSQHICSECGKNFASRQGLWEHRKMHSLETIYKCLECEKTFTSRQGYQIHNRKHRDERPYGCSYCWKAFRDGGTLRKHERIHTGERPHACPLCAKAFNQKVVLREHIRCMHVAKMNPEEDDVFICRICQEKIVEKDDLCAHFIKHSDCMARIAKNASKNNIINLEEFGKEKLDCDLCGETFSNKDELHEHIRIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -