Patr060671.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010001105.1:1224821-1238452[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00028 0.34 13.5 0.0 18 40 31 53 15 55 0.80 2 2 0.00028 0.34 13.5 0.0 18 40 347 369 331 371 0.80
Sequence Information
- Coding Sequence
- ATGGAGAGGAGTGCTACGGGAAAGAAACGATTAAAACCATATGCAGAAGCGATTAAGACTGCTGCTAACAAACTTCTTCTAAACAAAGGAACGTTACGACAAGTTGCCAGCGTCCACGGAGTTTCAAAAAGCACGCTCACAAGACACATCGAAAAACATAAATTATCCGGAGAAGCAGTCCTCGCACACTCGTCGTACCGTTCGTCATTCAATAACTTTAACCCCGATTCGATCATAAAATCTGTAAGGCTCATGGAGCAAAATATCTTCAACTTGTCGTCGGTTTTCTGCGATAAACCGGAGGATCAACCGGTCAACGTGTCTGTTCACGACTCTGCATCCATCGAGGTAAAAGAGAAGCTGGAGAGTACGCAGAAGAGCTTAGCTCGCGTAGAAAATCTAATAGAAGATCTTAACTACAAAATAAAAATAGTGACTCAAAAAATTAATGAGTCGAGGACTTATAGATTGAGCTATTCCTCCTCTTGTACCCAAACGGAGTGTCCTACACCACCTCAGGAATCCTCTCGCAAGGAAGTCAAAGTGCCCATCAATGCAAGATCTTATTCTACCTTGAATCTGAGACATGACAGGATTGAAACAAAATGGCACTATGTGGTTGCAACAACCTCTGTTACTTTCTCCGCCGCAATTACCTTCTCCGCCTCAACTCAACTGCCATCTCAGCGTAATCCTGAAGCTGACTCCCACCAGACTAGGCAGGTCATTTTCACTAGCCATGGTAATCCCGTCACTCCAGTGAACTCTACAGGGACCATCTCCTACAACAACAAACGTGCCACCGAGACTGTTACTACGACCACATCTGACAAGCAGGCTATTGCCGCTTGCAAATCAAATGTCCTAGCTAACAGTTCTTCGATAATAATTTCCAGCCCTATTAGGCCTAGTGACCCACAAACTTTATtggaccccatgactccaccaATGGAGAGGAGTGCTACGGGAAAGAAACGATTAAAACCATATGCAGAAGCGATTAAGACTGCTGCTAACAAACTTCTTCTAAACAAAGGAACGTTACGACAAGTTGCCAGCGTCCACGGAGTTTCAAAAAGCACGCTCACAAGACACATCGAAAAACATAAATTATCCGGAGAAGCAGTCCTCGCACACTCGTCGTACCGTTCGTCATTCAATAACTTTAACCCCGATTCGATCATAAAATCTGTAAGGCTCATGGAGCAAAATATCTTCAACTTGTCGTCGGTTTTCTGCGATAAACCGGAGGATCAACCGGTCAACGTGTCTGTTCACGACTCTGCATCCATCGAGGTAAAAGAGAAGCTGGAGAGTACGCAGAAGAGCTTAGCTCGCGTAGAAAATCTAATAGAAGATCTTAACTACAAAATAAAAATAGTGACTCAAAAAATTAATGAGTCGAGGACTTATAGATTGAGCTATTCCTCCTCTTGTACCCAAACGGAGTGTCCTACACCACCTCAGGAATCCTCTCGCAAGGAAGTCAAAGTGCCCATCAATGCAAGATCTTATTCTACCTTGAATCTGAGACATGACAGGATTGAAACAAAATGGCACTATGTGGTTGCAACAACCTCTGTTACTTTCTCCGCCGCAATTACCTTCTCCGCCTCAACTCAACTGCCATCTCAGCGTAATCCTGAAGCTGACTCCCACCAGACTAGGCAGGTCATTTTCACTAGCCATGGTAATCCCGTCACTCCAGTGAACTCTACAGGGACCATCTCCTACAACAACAAACGTGCCACCGAGACTGTTACTACGACCACATCTGACAAGCAGGCTATTGCCGCTTGCAAATCAAATGTCCTAGCTAACAGTTCTTCGATAATAATTTCCAGCCCTATTAGGCCTAGTGACCCACAAACTTTATtggaccccatgactccaccagtagttcgTTCCACTGTTCACAAGTCCGTTCGTGTGCTGAGCGACATTATTGCGAAGCAAATACGAGCGTCCACTTCTGGTGAAACAGTTAACCATAATGTAAACGTAACCATGATAGCCTTCCTCCCACCAATCATCATTTTTCCGCGCGTCCACTTCAAGGACTACATAATCAATAATTAA
- Protein Sequence
- MERSATGKKRLKPYAEAIKTAANKLLLNKGTLRQVASVHGVSKSTLTRHIEKHKLSGEAVLAHSSYRSSFNNFNPDSIIKSVRLMEQNIFNLSSVFCDKPEDQPVNVSVHDSASIEVKEKLESTQKSLARVENLIEDLNYKIKIVTQKINESRTYRLSYSSSCTQTECPTPPQESSRKEVKVPINARSYSTLNLRHDRIETKWHYVVATTSVTFSAAITFSASTQLPSQRNPEADSHQTRQVIFTSHGNPVTPVNSTGTISYNNKRATETVTTTTSDKQAIAACKSNVLANSSSIIISSPIRPSDPQTLLDPMTPPMERSATGKKRLKPYAEAIKTAANKLLLNKGTLRQVASVHGVSKSTLTRHIEKHKLSGEAVLAHSSYRSSFNNFNPDSIIKSVRLMEQNIFNLSSVFCDKPEDQPVNVSVHDSASIEVKEKLESTQKSLARVENLIEDLNYKIKIVTQKINESRTYRLSYSSSCTQTECPTPPQESSRKEVKVPINARSYSTLNLRHDRIETKWHYVVATTSVTFSAAITFSASTQLPSQRNPEADSHQTRQVIFTSHGNPVTPVNSTGTISYNNKRATETVTTTTSDKQAIAACKSNVLANSSSIIISSPIRPSDPQTLLDPMTPPVVRSTVHKSVRVLSDIIAKQIRASTSGETVNHNVNVTMIAFLPPIIIFPRVHFKDYIINN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -