Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 7.1e-09 8.6e-06 28.2 0.0 2 40 17 55 16 59 0.91

2 2 6.4 7.8e+03 -0.5 0.0 25 40 163 178 162 182 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	7.1e-09	8.6e-06	28.2	0.0	2	40	17	55	16	59	0.91
2	2	6.4	7.8e+03	-0.5	0.0	25	40	163	178	162	182	0.76

Coding Sequence: ATGGTTCGTTCTTATGTGAGAAAAACTGAAAGGGGTCAATCTTACACCCCCAGAACTCTACATACAGCCCTGGATTATGTGAGAAATCAAGATAAAACAATTAGAGGGGCAGCAAAGCATTATGGAATTCCAGAAACAACTTTAAGGGACCATTTGAAAGGACGCAGAGGGAAGAATAGCCAGAATCAGGGTCGAGGGACTTACATTCCTATAGATAAGGAAATTCAACTTGCAGATGGACTAGAAACAATGGAGAGGTGGGGCTTAATATCCAGAGCTTTCCGTCGTACAGAGAACAGTAGCCAAAGAACTGAAGAACGCCAGAAACCCGTTAGCACAGCATACCTACCATATGTTCATGGATCAACTGACAAAATCGCCAGAATACTTAAAAGACACAACATAGACACCATTTTCAAACCTAACCAGAAAATATCCTCCATGCTACGCAGCGTTAAAGACACCATCCCGTTAGAATCCCATGGAATTTACGAAATACCTTGCGGAACATGTGAACGGACCTACATTGGACGTACCAATAGAAAAATATCTGCTAGGATTCAAGAACATGTAGTTTCAATCAGACACAGAGACAAAGTTTCATCAGCACTTGTCCAACACACAAACACTGGTCACTGGATGGACTTTAGAAATTCAAGGACTGTTGCACAGATTAGCCACGAAATGTCACGAGTATACAGAGAAGCCATAGAGATAGAAAAACGAGACTACTGCATGAACACGAGAGACGATTCCTTGAGACTGCCCCAGCATGGCGACCGATCATATCCACCCTCAAAATGCAATCCCAGACACCCCAGACTCATGTACGACCAACAAAACAAACAAACAACCGAACCGAAGCATCGCACACAACGCGCATGA
Protein Sequence: MVRSYVRKTERGQSYTPRTLHTALDYVRNQDKTIRGAAKHYGIPETTLRDHLKGRRGKNSQNQGRGTYIPIDKEIQLADGLETMERWGLISRAFRRTENSSQRTEERQKPVSTAYLPYVHGSTDKIARILKRHNIDTIFKPNQKISSMLRSVKDTIPLESHGIYEIPCGTCERTYIGRTNRKISARIQEHVVSIRHRDKVSSALVQHTNTGHWMDFRNSRTVAQISHEMSRVYREAIEIEKRDYCMNTRDDSLRLPQHGDRSYPPSKCNPRHPRLMYDQQNKQTTEPKHRTQRA

Sequence clustering based on sequence similarity using MMseqs2