Patr050837.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000886.1:674582-675091[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-10 3.1e-07 32.9 0.0 5 40 1 37 1 39 0.90
Sequence Information
- Coding Sequence
- ATGAATAATGCTATCGAGACGGTTATTTCTGGCCAATCTGGGTATTTGAAGGCTTCGAACCAATTTGATGTTCCCCAGTCTACTCTGGAAAGATACGTTAAAAAAAGAAGGGAAAACCCCTACTATAAAATTGATAAAATGGCTGGGAAATTTAAAAACATATTTACAGAAGAGCAGGAACTTGAGCTCGTTAACTACTTAAAAACATTGGAGGCTAGATTATTCGGTATAACAATGAAAGACTTGCGTAGTTTAGCTTATGAGTTGGCTATAAGAAATGGCATTGGTCATAGATTTCAAAATGGAATTGCAGGCCAAGATTGGGCCAATGGATTCCTTAAGCCACATCCTACTTTATCTGTTCGCaaaccggaagcaacatctggtgcaagagctatggactttaataaagtagctgtagataattttttttctttactaacgaatttagttgacaagttcaaactaacggcttgtcaaatatttaattgcgatgaaacgggtgtttga
- Protein Sequence
- MNNAIETVISGQSGYLKASNQFDVPQSTLERYVKKRRENPYYKIDKMAGKFKNIFTEEQELELVNYLKTLEARLFGITMKDLRSLAYELAIRNGIGHRFQNGIAGQDWANGFLKPHPTLSVRKPEATSGARAMDFNKVAVDNFFSLLTNLVDKFKLTACQIFNCDETGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944165;
- 90% Identity
- iTF_01196646;
- 80% Identity
- -