Patr002135.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- pol
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000034.1:46175-50163[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-11 3.2e-08 36.0 0.0 1 35 15 49 15 53 0.91 2 2 7.2 8.7e+03 -0.6 0.0 15 26 445 455 441 456 0.87
Sequence Information
- Coding Sequence
- ATGCCCAACGTTAAAAAAGGAAATAAATATTTCAAAAAATATACCGAGAATCAAATTGAAGATGCTATTAATGCAGTTAAAAATGGGATGTCGCAATGCACAGCTTCCAAAAAGTTCGGTATTCCTAAATCAACAATTCAATTTCGACTTAGTAATGCATTCATCAAAGCTACTCCAGGTCCGTCTCCTGTATTAGGATGCAATGCAGAAGAGGACTTAAAGAAACACAAATTAAACGAAAATACAAGCCACACCCACCCCTATAACATTGATGAAGTTTCCCTGGAAGAATTTCTTTCTGCCCTCTTCCACGGTAAAAACTCCTCCCCTGGGCCCGATTTAGTCACCAAACACCTCATCAGACTCCTCTCCGAAGACATCCACTCCTTTATCACAAAAATTTTCAATTTCTGCCTCTTGAAATGTACCTTTCCTAGCTGCTGGAAAATGAACACAATAGTCACAATCCCTAAACCTGGTCAAGATAAATCCATTCCCAGCAGTTACCGTCCGATCTCTCTCCTCCCTGTTCTTGGCAAAATCCTCGAACATATCATTAAAACCCGATTATGGAATTCCGTTGCAGACCACATTCCCAAATATCAATTCGGTTTCAAGCCCTTCCATTCCACTATCCATCCTCTGTTCATCCTAACCAACAATATCCAAGCGTCACACCTCCAAAACAAGAAATCCGCAGCCCTCTTCTTGGACATCAACAAAGCATTTGATAGCGTTTGGCATGCCGGGCTTTTGTTCAAAATGTCGCAAATTAATGTCCCTCCCTACCTATTCCACGTAATTAAAAGTTTCCTTTTTAACAGATCCTCAAAAGTAAAAATCAACTCCATCTCTTCTCccgcattttcccctctgcaaggtctacctcaaggttccccactttcccctctcctatacaatatatactgtcacgacatttacaactacaatcaactagacaaatctcacattgacttttgttcctacatactacaatacgctgacgacactgcactgatttcccatagcaactccctcaaatctaccttcgacctactccaaaaactcaccaacaacactctcgcttggttcaaccagtggagattatcaccaaatccttccaaatgccaactCCTCATTCCTAACCACAAAATTTCCTCAAACTCACCTCGCATCCACACAGGCTCCTCCGACGTACGGCCCTCCAGCAGCGTTAAATATCTTGGACTAACTATTGACTCGAAACACAAATTCAATAACGACGCCAAATTACGCAAGTCCCAGATAATTAAACGATGCAAGCACTCTAGAGCCTTTACGAATGGCAACCAGGGTATTTCCATAAAGACCGCGGCGAAAATCTACAAATCTATCTGTCGTCCCATTCTCGATTATGGACACGTAATTACCTCCACCAATAATAAATGTAGACGAACCCTTGAGGTCGCAGAGCGAATCGCATTACGTCTCATCACCAAACTCAGACATCCTAACAACCCTCTCCACAACCCCTCCAACGTAGATCTCTATAGACAAACCCGGGTCCCTCCTCTAGCTGACAGACATGACAGACTTAGGAGAAAGCTTAGAAAAAACCATATGACGTTCAACATCCTTGACGAACTATGCATTAAACGTCCATCTAGACATTCTAACCGACAATACCCCTCCAAAACTCTTCTTGAATCCTTAGAAGACGACTGA
- Protein Sequence
- MPNVKKGNKYFKKYTENQIEDAINAVKNGMSQCTASKKFGIPKSTIQFRLSNAFIKATPGPSPVLGCNAEEDLKKHKLNENTSHTHPYNIDEVSLEEFLSALFHGKNSSPGPDLVTKHLIRLLSEDIHSFITKIFNFCLLKCTFPSCWKMNTIVTIPKPGQDKSIPSSYRPISLLPVLGKILEHIIKTRLWNSVADHIPKYQFGFKPFHSTIHPLFILTNNIQASHLQNKKSAALFLDINKAFDSVWHAGLLFKMSQINVPPYLFHVIKSFLFNRSSKVKINSISSPAFSPLQGLPQGSPLSPLLYNIYCHDIYNYNQLDKSHIDFCSYILQYADDTALISHSNSLKSTFDLLQKLTNNTLAWFNQWRLSPNPSKCQLLIPNHKISSNSPRIHTGSSDVRPSSSVKYLGLTIDSKHKFNNDAKLRKSQIIKRCKHSRAFTNGNQGISIKTAAKIYKSICRPILDYGHVITSTNNKCRRTLEVAERIALRLITKLRHPNNPLHNPSNVDLYRQTRVPPLADRHDRLRRKLRKNHMTFNILDELCIKRPSRHSNRQYPSKTLLESLEDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -