Patr005085.1
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- -
- Assembly
- GCA_944567605.1
- Location
- CALYMX010000082.1:31892-32569[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-12 8.5e-09 37.8 0.0 3 40 17 55 15 57 0.91
Sequence Information
- Coding Sequence
- ATGGTTCGAAATTATAAGAAAAAAACAACTAGGCAATCATGGTCTATCGAGGAAATGAATAATGCTATCGAGATGGTTATTTCTGGCCAATCTGGGTATTTGAAGGCTTCGAACCAATTTGATGTTCCCCAGTCTACTCTGGAAAGATACGTTAAAAAAAGAAGGGAAAACCCCTACTATAAAATTGATAAAATGGCTGGGAAATTTAAAAACATATTTACAGAAGAGCAGGAACTTGAGCTCGGTAACTACTTAAAAACAATGGAGGCTAGATTATTCGGTTTAACAATGAAAGACTTGCGTAGTTTAGCTTATGAGTTGGCTATAAGAAATGGCATTGGTCATAGATTTCAAAATGGAATCGCAGGCCAAGATTGGGCCAATGGATTCCTTaagcgacatcctactttatctgttcgcaaaccggaagcaacatctggtgcaagagctatgggctttaataaagtagctgtagataattttttttctttactatcgaatttagttgacaagttcaaactaacggcatgtcaaatatttaattgcgatgaaacgggtgtttcagtgaaccccaaaaatcaatcaaagatcatagcttgcaaggggaaacgtcaagtcggatcgttaacatccgcagaaaggggtaacctgccttatttgtatgtcggcaagcggtaa
- Protein Sequence
- MVRNYKKKTTRQSWSIEEMNNAIEMVISGQSGYLKASNQFDVPQSTLERYVKKRRENPYYKIDKMAGKFKNIFTEEQELELGNYLKTMEARLFGLTMKDLRSLAYELAIRNGIGHRFQNGIAGQDWANGFLKRHPTLSVRKPEATSGARAMGFNKVAVDNFFSLLSNLVDKFKLTACQIFNCDETGVSVNPKNQSKIIACKGKRQVGSLTSAERGNLPYLYVGKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00944952;
- 90% Identity
- iTF_01196647; iTF_00944952; iTF_00943790; iTF_01196666;
- 80% Identity
- -