Patr127966.2
Basic Information
- Insect
- Phosphuga atrata
- Gene Symbol
- lov
- Assembly
- GCA_944567605.1
- Location
- CALYMX010006773.1:139761-145156[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-17 1.5e-14 56.3 0.0 1 44 293 336 293 337 0.96
Sequence Information
- Coding Sequence
- ATGTCACAtgtgatacaagaacaactacaatctctcatcaaagcagcagaaagcctacaagtccgcggtcttgcGAACCAAGACCATTTCGGCATTGACAAAGAATCCAACTCAATTACAAACCAAACCCCAACCCCATCCACTTCCCCAAACGATTTCGACCGCGGTTTCTACACGAACCGCTTCCCGACGCCCGGCGTCACAGCGCGTACCCCCGGAGACCGATCCTCCCCGTTCTCCCCAGTACCTGGACCAAACTACGAACCTCCCATGAAACTCCCGCACATGACCCTCAACTTCCCCGAAACTCTCCTCCCCCGTCCAGAATCTCCTCAACCACGACGAAAACAAGCCAGACCCAGAAGGCGATCCGGAGAGCTCTGCGGCGTCCAAGACCTCTCCACCAATAACACCCTCAAACCCGCAACACCCGAAGAGGAAACTGCCGAAAATTTATGCGTTAAACGGCAACCGAAAGAGAAGAAAGAAGATGAGAGGATAAAGATGTTAACGCCGGATCCGTCCGGAAGTCCCGAGCTGGATTTGAGTATGCATCATAAAGAATTCGCGCCGTCTCCTCCATTAAACCTGCCAAACATTTTGAATTTAAAACATGAAATGGACAGCCATTCTCCGCTGCCCTTTCCTCCCATGCCCTCGGTTTCTGCTCTAGCCATGACACCACCACACAGTAAATTTTTCGGTCTGGACTCACCACTCGGACTCTTCCCGCCCGGTCTAGATGGCTGCAGAAATCCTTTGTTAGACATGGCTGATCCCAGATCGGCACCAGATGTACCACTTTTCGCTAAGAAGAAAATGGGAAGACCAAAGGGTCAACATTCTGCACCAAGAGGAGGTCCCCCGCGTTCGTGGACGAATGCTGAATTAACGGAAGCTTTACAACATGTTTGGAATAAGAAGATGACGACGAGTCAAGCTTCACGAATCTTCGGCATTCCTTACAATTCCCTCCTAATGTATGTCCGTGGTAAATATGGCAAAAGTTTGAAGCTCGAACAACTCCGCAAAGATTGTATTGGTGGACCGGGCATGGACCTGATGAACATCGGAGGTAACAATAATAATAATTGTAAATCAGAAAGGGAAGATACGGCGCAACCTAACACGAGGCCTCCAAGCACAGAAGAGCAACCTCCGGTTTTCAACCCGTTCGCGCCGAATTTTTATCCTGATTTCGGTACGGGATTTCCGATTCCTGTTAGTATGATCCATTTATTGCCGCAAAGTGAGAAAAATAGGGAACATTACGGGCAGCCTAATGTAGAAGAGGAGTGCGGTAAAGGTGTGAAGGAAGAACCCCAAGATTTATTCATGCCGCCTACGTTAGACAGACGCGAACTGGTGCAACAGAACGGACAAGACTAA
- Protein Sequence
- MSHVIQEQLQSLIKAAESLQVRGLANQDHFGIDKESNSITNQTPTPSTSPNDFDRGFYTNRFPTPGVTARTPGDRSSPFSPVPGPNYEPPMKLPHMTLNFPETLLPRPESPQPRRKQARPRRRSGELCGVQDLSTNNTLKPATPEEETAENLCVKRQPKEKKEDERIKMLTPDPSGSPELDLSMHHKEFAPSPPLNLPNILNLKHEMDSHSPLPFPPMPSVSALAMTPPHSKFFGLDSPLGLFPPGLDGCRNPLLDMADPRSAPDVPLFAKKKMGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPGMDLMNIGGNNNNNCKSEREDTAQPNTRPPSTEEQPPVFNPFAPNFYPDFGTGFPIPVSMIHLLPQSEKNREHYGQPNVEEECGKGVKEEPQDLFMPPTLDRRELVQQNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01185256; iTF_01184388; iTF_01186106; iTF_01186343; iTF_01096765; iTF_01096540;
- 90% Identity
- -
- 80% Identity
- -