Pvar011688.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phortica variegata
Gene Symbol
-
Assembly
GCA_001014415.1
Location
JXPM01003328.1:15809-28017[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.00082 0.068 13.6 3.1 1 23 554 576 554 576 0.99
2 8 0.00015 0.013 15.9 1.3 1 23 608 630 608 630 0.97
3 8 0.71 59 4.4 2.2 1 20 638 657 638 662 0.88
4 8 0.0023 0.19 12.2 0.0 3 23 669 690 668 690 0.96
5 8 0.00011 0.0089 16.4 1.7 1 23 696 718 696 718 0.97
6 8 0.055 4.6 7.9 0.7 1 23 725 748 725 748 0.94
7 8 0.00024 0.02 15.3 2.2 2 20 755 773 754 776 0.91
8 8 0.17 14 6.3 8.4 1 23 782 805 782 805 0.96

Sequence Information

Coding Sequence
AtgttggcgatgatgatgagNACTACTTTTGGTGGCGAGGAGGATGtcggcgatgatgatgatgatagtaaCGGCTATGATGAACAATCTGCGCGACGTTTGAAAATATCGCAGACGTCACTAAGACGAAAGCGcgcaatcaacaacaatgcccATATGCATGTACACAAAACTCACCCGCGTTTTTTGAACGAACGTTTGTTGCTAGAGGCTAGTTTACGGCCTAAGCTAGGCGAAGGCTATGTTTTCCATGAGGATCATCAGTATACTGTTAAATATCATCACAGCACTGGTGAATTCAATGATCGTTCGTTTAAAAGTCAGTTTCGCATACGGTTAAAAGCCGCACTCAGGCATCACCATAAAAGCTTTCTTAAGCAATTCTATGAGCAATTTGTTATTACGGGGCAATTGTTGGGCACAACACCATCAGCATGTATATTGAGCTCATTGCGTAAGCAACGTTTGGAGGAATGGCGACAACAACGTGAGAAACGTGAACAATTGACGGCAACTTTgcttgaacaacaacaacgtcaacgtcataCGGCTGCTTTTACCTTTGGTGATTCTGAACTGGATTCGGAAACGGAATCACAACTTTCATCTACGCAAGCACaagaaattatgaaatttgaaGAGTTCATTGATGAAGGTGTGGGCGCTGGTCGTCTTATTGATGGGCTGGAAATGGAGCCAGAGATCGATGATGTATTAGTTGGCACAGGTAGTGCAGGCAGTGCCAGCGTCAGTGGGAGTGGCCACAGTAATAGTAATAGTAGTAGTAGCGGCGGCAATGACAACGGTTTACCAACAGATGCTCTAACTAATACGCTTGATAGTGATGGATTAACGTCTATTGGCAATCAAGAACCTTTACAACgCAGCAATACAAACCTTGTGATCAATGGCCTTACAACAAGCAATACTAATATCAATGTAATAGTCGGTCAGCAAATAACTAACATTGTTGACAATATGACAAATATGTCTTgcaaaaagcaagaaatacaaatgcaacagAAAGAACACgaacaaatgcaacatttgcaacagcaaaaacaaatgccagACATAAACAATACCCACAACGTTCAGCAACCAATCAGTGGTGATAACAGTGGTCAAGTAGAAGCCTCAATACAAATGGAAATGTTTAGTAGTAATAATCAGTCACAGTTAACCCAAGAGCAACAAATTATGCTTCGACAACaacacctacaacaacaacatcaacaacaacaagaacaacaacaaaatcacttTAATTCCAATGCGCCAACCACGTGCAATCCATTGGCAATGATGGGTGGCATGATGCAAAATGCACACCATCAAGGTCAATTGCAACCAAATGCCATTAGCATTAATCCTAGAGAATCACTGAATTCATTGCAAGAACATATGCTTGCCTCAACAGGCTCATCTTCGCTGGATGCTACTGCACAGTTGAACACGTCAAATGAACTAGACGATAACGAGCTTTCgcatgatgaggatgatgatgaaattGATAATGATACGGATGATTTGGATATAACAAAGCAACAGTTAATTGACGGtggcagtagcagtagcactTCACTGCAAGCGCCGCCATCGCAACAAGCTACCGGATCTGCAGCTAATACACAAGGCGGCAAAAAAGAGAAACCCAGTTACAAATGCCTGTTGTGCACAAAGTCGTATCGTAAACGAAAATCGTTATTAGATCATTATAAAATTCATCCTGGTTATTGCCATGACTGTGGTCAACCCAATGGCAATACGTTAGAGgaTATTATACAACACAACCGTACCGTGCATGTGAAGGAGTTTCCATTTGTTTGTGAAACGTGCGGTGAATCGTACTCACGTCGACAGCAATTTCATGCGCATGTCGAGTCGCATAGTAAGAAGGAATTCAAAAATTATTCATGTGGCGAATGCAGCCAGAAGTTTCCACATAAAAAGCTACATCAACAACACTTGGAGGAAACTGGACATAAAGCTGATGGTGCTATTTGTGAAGTTTGCGGTGCTGAGTTCCCATCGAAAAATGCGCTTTATCAACACATCATACGCGTGCATAAACGGGATAATTTCTTTGAATGTCACATTTGTCAGAATCGTTTTACGCTGAAGGCAAATTTAGAGCGACATGTCCAATTGCATACTGAAGTAAAGCGGACACATGTTTGCAACCTCTGTGGCTCATCGTATTTTACATATCCTGCGCTCAAAGAGCACTATAGCAACGCTCACGTTGACGTATCGGAATGTAAATGCACGCTTTGTGGTAAACGATTCGGCTCAGCCAAATCGTTGCAGCGTCACTTGCCTTCACATTCAGAAGAGAGACCACACTGTTGTAATTTCTGCGatcaaACTTTCAAGTGGAAAACACATTTGGTACGTCATAAGCAAACAGTGCACGGCAATCAACCATCTCCAAAGAAAGTAAAACGTTTTGCAAAGGTCGATGAAGaaCTGGTACCACTGCCAGATATGCCTGGGCCACCGCCAGCAAAAGCACcgaaaaaagcaaatgcaagtaaagcaaaaactcAACCAGGCCAAGGCGCACAGCCGCAAGTCACCCAAAAAGTTGTTGGTGCCGTaccaacaccaccaccgccgcttTCAACAACGCCGGGATCCTCGCAGCAGGAACAATTTAATGCTGCAATGGTTAGCAATAATAGCTCCCAATCGTCGACAGCATCAACATCGCAACATTCGATTTCAACAAGTGAATCTCAACAGAATTCCATGTACAGTCAGAGCTTTACGGCAGAAAAATTGATCGGTCaagcacaacagcagcaacaacaacagccgccgccgccgcaacaacagcaaccgcaGTGCAATACCacacaacagcaaacagcGTTGCATCAACATCCTACACCACCGCCATCACAACCGTCGCAACATCACAGACACACCCCAAATAATACGGCAAATGATGTACATCTTAGTCGAATGAATAGTTTTGGTAGTCAAGagaatcaatttcatttcgatCCAACTGCAAATACGGCGAATACatatcagcaacatcaactaATCAATcaatatcaacagcaacatcacataccccaacaacaacaacaacagcaacagcagcaacatatGCGAAGTCACACACCACAAAGcccacatcaacaacagcaaatgccaACACACTTCAATTCGCCAATACATATGCCGCAAATTCACCATCCACATCAATTGATGCAACATCCACAAcatcaattacaacaacatcgacatcaCAATCAGCAGCAACCGTCTCAGCGCTCGCCATTACACCATCATCAAACGCAAgcgcaacaattgcaacaacaacaccaacagccgTCACATTCACCACAACATGCGCGCCTGCAATCGCCACAACCGCCACTGACACcaacacagcagcaacaatacttacaacaacagcagcagccgccgGAGAGTTGGGGAAATATTGGTTTTGGTGGACAGACAGCTAAcagtcaacagcagcagcagaattTACTAAAGCAAGAAGAGCTCAAggacaatagcaacaaattttacattGTCGACTCGACTGAATTTTTGGGGCTTCCAATGAATGTTTCCGGTGCTACTAGTACTACTGctccacagcaacaacaacagcagcagcaatctGCGCCTGTGGGGAGTAGCAAACAACAGGAAACTGCGTTGAGTGGTGATTTATTAAGTTTTCAACATATGTGGCCACAAGGACCAACATTTGGTAATGTTGgacctcaacaacaacaacaacaaacatctcaacaacaacaacagcagcagcagcaacagcaatcaaATACTAATCAAACTGTGAGCACGGATCcgcacaattacaacaacatcggTAGCATACTCACGAATCTCATTGACCCGAATACAGCGCCAATGGAGTATAATTTTGATATGCTGCAGACAACGCAtacaccacaacaacagcagcagcaacagcaacaacaagcggcGCAACAACATCATGCAAACACTGCTTATGGTTTGCAACAAACGGCCGGTCCTGCTGGTCTTATACGTCATGCACCGAATGTTTATGGTGGCAATGCAGCAACAGTCTATGAAGCACATCATGGGGCTCAAACACATCACAGCGCACTTGGCGATCAGTTAAATgaacaacagaaaaacagTTTTCAGCCATATCATACACTGCAACAACATGCGCTCGGTAGTGGTCATCCGCTGCATTCGCTGGCAGGCGCTTCACATCTAttaccgccaccaccgccaccaacaCACGGTGGTGTCTATGAACGCACCGGTAACGTTGGCTATCCTATGCTAGGCGATGAAGCCAAAGCTGTCCTGCCGCCAATTAACGATTATATGCATcacatgcaacagcaacaggtgCCACCACATTCTCAACAGGATCTGGTCTATTATCCAGTGAAAAATGATTGA
Protein Sequence
MLAMMMXTTFGGEEDVGDDDDDSNGYDEQSARRLKISQTSLRRKRAINNNAHMHVHKTHPRFLNERLLLEASLRPKLGEGYVFHEDHQYTVKYHHSTGEFNDRSFKSQFRIRLKAALRHHHKSFLKQFYEQFVITGQLLGTTPSACILSSLRKQRLEEWRQQREKREQLTATLLEQQQRQRHTAAFTFGDSELDSETESQLSSTQAQEIMKFEEFIDEGVGAGRLIDGLEMEPEIDDVLVGTGSAGSASVSGSGHSNSNSSSSGGNDNGLPTDALTNTLDSDGLTSIGNQEPLQRSNTNLVINGLTTSNTNINVIVGQQITNIVDNMTNMSCKKQEIQMQQKEHEQMQHLQQQKQMPDINNTHNVQQPISGDNSGQVEASIQMEMFSSNNQSQLTQEQQIMLRQQHLQQQHQQQQEQQQNHFNSNAPTTCNPLAMMGGMMQNAHHQGQLQPNAISINPRESLNSLQEHMLASTGSSSLDATAQLNTSNELDDNELSHDEDDDEIDNDTDDLDITKQQLIDGGSSSSTSLQAPPSQQATGSAANTQGGKKEKPSYKCLLCTKSYRKRKSLLDHYKIHPGYCHDCGQPNGNTLEDIIQHNRTVHVKEFPFVCETCGESYSRRQQFHAHVESHSKKEFKNYSCGECSQKFPHKKLHQQHLEETGHKADGAICEVCGAEFPSKNALYQHIIRVHKRDNFFECHICQNRFTLKANLERHVQLHTEVKRTHVCNLCGSSYFTYPALKEHYSNAHVDVSECKCTLCGKRFGSAKSLQRHLPSHSEERPHCCNFCDQTFKWKTHLVRHKQTVHGNQPSPKKVKRFAKVDEELVPLPDMPGPPPAKAPKKANASKAKTQPGQGAQPQVTQKVVGAVPTPPPPLSTTPGSSQQEQFNAAMVSNNSSQSSTASTSQHSISTSESQQNSMYSQSFTAEKLIGQAQQQQQQQPPPPQQQQPQCNTTQQQTALHQHPTPPPSQPSQHHRHTPNNTANDVHLSRMNSFGSQENQFHFDPTANTANTYQQHQLINQYQQQHHIPQQQQQQQQQQHMRSHTPQSPHQQQQMPTHFNSPIHMPQIHHPHQLMQHPQHQLQQHRHHNQQQPSQRSPLHHHQTQAQQLQQQHQQPSHSPQHARLQSPQPPLTPTQQQQYLQQQQQPPESWGNIGFGGQTANSQQQQQNLLKQEELKDNSNKFYIVDSTEFLGLPMNVSGATSTTAPQQQQQQQQSAPVGSSKQQETALSGDLLSFQHMWPQGPTFGNVGPQQQQQQTSQQQQQQQQQQQSNTNQTVSTDPHNYNNIGSILTNLIDPNTAPMEYNFDMLQTTHTPQQQQQQQQQQAAQQHHANTAYGLQQTAGPAGLIRHAPNVYGGNAATVYEAHHGAQTHHSALGDQLNEQQKNSFQPYHTLQQHALGSGHPLHSLAGASHLLPPPPPPTHGGVYERTGNVGYPMLGDEAKAVLPPINDYMHHMQQQQVPPHSQQDLVYYPVKND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01195652;
90% Identity
iTF_01195652;
80% Identity
-