Basic Information

Insect: Phortica variegata
Gene Symbol: RREB1
Assembly: GCA_001014415.1
Location: JXPM01014118.1:384-8362[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00049 0.041 14.3 1.0 1 21 250 270 250 272 0.96

2 12 5.7e-05 0.0047 17.3 0.2 1 23 282 304 282 304 0.98

3 12 1.5e-05 0.0013 19.1 7.5 1 23 310 332 310 332 0.98

4 12 0.068 5.6 7.6 0.9 2 19 441 458 441 458 0.97

5 12 0.0057 0.48 11.0 0.1 1 23 583 605 583 605 0.97

6 12 1.6e-05 0.0013 19.0 0.8 1 23 615 637 615 637 0.99

7 12 0.00053 0.045 14.2 2.0 1 23 643 666 643 666 0.97

8 12 0.0019 0.16 12.5 2.0 1 23 915 938 915 938 0.95

9 12 5.6e-05 0.0046 17.3 0.3 2 23 1195 1216 1194 1216 0.97

10 12 0.093 7.8 7.2 6.3 1 23 1222 1245 1222 1245 0.97

11 12 0.054 4.5 7.9 1.1 3 23 1400 1420 1399 1420 0.91

12 12 0.0007 0.058 13.9 4.6 1 23 1426 1448 1426 1448 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00049	0.041	14.3	1.0	1	21	250	270	250	272	0.96
2	12	5.7e-05	0.0047	17.3	0.2	1	23	282	304	282	304	0.98
3	12	1.5e-05	0.0013	19.1	7.5	1	23	310	332	310	332	0.98
4	12	0.068	5.6	7.6	0.9	2	19	441	458	441	458	0.97
5	12	0.0057	0.48	11.0	0.1	1	23	583	605	583	605	0.97
6	12	1.6e-05	0.0013	19.0	0.8	1	23	615	637	615	637	0.99
7	12	0.00053	0.045	14.2	2.0	1	23	643	666	643	666	0.97
8	12	0.0019	0.16	12.5	2.0	1	23	915	938	915	938	0.95
9	12	5.6e-05	0.0046	17.3	0.3	2	23	1195	1216	1194	1216	0.97
10	12	0.093	7.8	7.2	6.3	1	23	1222	1245	1222	1245	0.97
11	12	0.054	4.5	7.9	1.1	3	23	1400	1420	1399	1420	0.91
12	12	0.0007	0.058	13.9	4.6	1	23	1426	1448	1426	1448	0.99

Sequence Information

Coding Sequence: atgattgcaacgcagcaacaacaacaacagcaaacagcgACATATGATgagcgcagcagcaacaacaatagcacaacagcaacaacaactcaaataaaaatggagCGACGTGATTCAACGACATCGGAATCGTCTGTCGAGCAACTTGACTTGGGTCGCACACCAAAGAAGCTGAGCACACACAATGCGGCAACATCGACGCCGCACATCActaatggcagcaacaacaacagcagcaacaacagtgccAGCCATCAGCTTAGTTTGGAGCttacgacgacaacaacaacaacgcgcaAACGTAAAATGCGACGCGCACATGATTCCGATAACGATAACGATTGTTGTGATGATATGCTAATCGATGCATCGACAAAGCCAACAAGCGCCGATGAAGATGATaagcaacgacagcagcagccgcagcaaacaacaacaatgctgacgCCACCAACAAcgcaacgcacacacaaaagacGCGGCAGCAGCGCACGTCTGGACAAGCGCGCCGTTGTGCAATTGGTCGCCGACGAGCCCGGCAACACTTTACGCAAAAACGGCAATAGCACACAATATTTGTTGAATGCCAGCGATGCTAATGTCACGGCCGCTGCTgtcgccgccgctgctgctgctgctgcggccgcTGCCGGCGTTGCCTCAGTCTCACACAGCTCGTCCGGCTCGGCGGGCTCGTCGCCGCACGGCGTCTCTAGTCCCGAATCGTTGGTGGACGAGCACATGAAGTATGTCTGTCCGATTTGTGATACAGTCTCGGCGACCCCGCATGAGTTCACCAATCACATCAGATGCCACAATTATGCCTCCGGCGATACTGAAAATTTTACATGCAAAATATGCTCAAAGGTGCTCTCATCTGCCTCATCACTTGATCGTCATGTGCTTGTGCACACTGGCGAACGACCGTTTAACTGTAAATATTGTCATCTAACCTTTACGACCAATGGCAATATGCATCGTCATATGCGCACACATAAACAGCATCAAcagaatcatcatcatcaacgtcATTCAACAAGTGCCAACAGTCAAAGctcaactaacaacaacaacaataataataataataacaacaaccataacaataataatagtaatcatcatcataacaacaacaatttgaaagccaacaacaacaacagcagcaataatttgaaacgcaAGAAGAGTGAACACAGCAATGATCTCTTGGATGCCGACTATGGGCCCGCCGCTTGTCCCGTCTGCAAAGTTGCCGATTTCGATTGCTTGCGCGATCTGGGCATGCACGTGGACAATGCACATCCGGAGATACCGGCCAAGTGCCGGGAATGTTCGGTGGTCTTTAGTACGCATCGGCAATTGAATATGCATCCATGTACGCAGAAGATACAAGCGGCCCGACGCGAGCAATTCCTGCGTCATTTGTACTACAAGAACAAGGCCGCCGTGGCCGCGGGCATGCTGTCGCCCAATCCGGACAACGATGCCGAAACGCCGTGCCACGTGGACGGCATGCTGATCAAGTATGAGACAAACGATACAAAACATTCGCATGACTCAAAGGATTTGGCGGATATACAATCCATCCTGAATATgacatcatcgtcgtcgacatCGAATTTCCTCAAGAATTTCGAACAATCGGTGAACACGCCGTCGAGCAACTACAGCCTGGACAAGGACGAAGAGGAGGCGCAGGACACATTCACATCGGAATTTCGTAAGATGAAATTACGCGGCGAATTCCCGTGTAAGCTCTGTACGGCCGTGTTCCCGAACTTGAGGGCGCTCAAGGGACACAATCGCATACATTTGAGCGCTGTGGGACCCTCGGGACCGTTCCGTTGCAACATGTGTCTGTACACGACCAGCGACAAGGCGGCCCTGGTGCGGCACATGCGCACGCATAACGGTGATCGGCCCTATGAGTGCGCCGTCTGTAATTATGCGTTCACAACGAAGGCGAACTGTGAGCGTCATTTGCGCAATCGGCATGGCAAGACGACACGCGACGAGGTGAAGCGTGCCATTATCTATCATCCGTCGGAGGATTCGTCGTGCGATGATCCCGGCAAgaagttgcatttgtttacGGGCGCATGTGATTTTGACGACGATATGGATTTGTTGGGTTTCCAGCAACATAATCAGCCCAAAGATCGTTCAACGCCCGTCTCCCATTTAAAGGATCTGTTGGCCGATGTTagtggtgttggtgttggtggcgCTGTCGCTGCACAAACGAAGCCCAAATTGCAGGTGAAGAGCTTGGATCTTCTGCTGGATAAGTCGGCTAGTGGCgcttacaataacaacaacaacaataacaatgaacaaCATCGTTTGAATCAAGCGGCGGCCACAGATGGCGAAACGGCGCCCATTGATCTGAGCATGGATGTGCTCGATCTCAGCAAGAAACCCAATGAGAAGTGCGAGAAATCAACAACGGATGCCGCCAATGATGCTGCGGCCGCAGTCGCtgcaATCAGTCCGCTGCTCTCCGACAAATCGAACACGCCGTCATCGTTGGCCTCGGCCTCGCCCAGCTCGATCGCACAGCTGTTGCCCAAATCGCTGGCATCGCCCACATCAACGGGCCAGGCCGGGCTCAATATACCGCGGCATCCGCACATCACCACGAATGCCGTGCTGCCCGGCGGCCCCGTCAAGATGGTCATCAAGAACGGCGTGCTCATGCCCAAGCAGAAGCAGCGTCGCTACCGCACCGAGCGGCCCTTCGCCTGCGAGCATTGCTCGGCACGCTTCACGCTGCGCTCGAACATGGAGCGCCACGTGAAGCAACAGCATCCGCAATTTTATGCCCAGCGCCAGCGCAGCGGTCATCATGTGATGCGCGGTCGTGGCGCCAGCAGCGCAGCGGCCATGAACAGCTTCAATCATCTGCAGGCCTACGCACAGgcgcagcagcatcagcagcacgCCAATGTCAGCGGTGGTGCTGGTGGCGGTGGCATGGGTCCGACGCCGATCTCGGATCATGTCAAGTATGCCATACTGTCACAGCAGCTGAAGGCACGCCGCGACACCGATCTGTTGCAGCAGGCGTTGGCACATGGCTCCAGCAGCATTGCGCAGAATCATTTGCTGTTGGGCGCTTCGGCAACGACCAATGCCATCAAAGCGGGTCAGTCCACCAGCAAGCTGAGTGCCGAGAACGAAGCCAAGCCGAAatcttcttcatcatcgtcggTGCCACCGCCGCCAGTTGGCGCGGGGCCACAGCCGCCACAACCACACACCATGAAATCAATGATTGCTCAGGCCGAATCGGTGGGCAAGTTCCTTAAGGAGGTCGCCAGCTCACCGTTCAAAGACGAATCTCAAGATCTTGTGCCCGTTTCGAAGCTGGTCGACAATGCGACCAGCAACAATCAGATGACCTTCAACAACTATTTTCGGCCCAGCGACGTTGCCAATCACATGGAACAGAGCGACGAAGAGGGCCTGGTCGCCTCGGGCAGCGCCAGCGAGAGCAACAATTCCGGCACCGAAGACGTAACCACACCGGCTGAGCCCAAAAAGAAATCAGCCTACAGTCTGGCACCGAACCGTGTCTCCTGTCCCTACTGCCAACGCATGTTCCCATGGTCGAGCTCACTGCGTCgtcacatactcacacacaccgGCCAGAAGCCCTTCAAGTGCTCACACTGCCCGCTGCTCTTCACCACCAAAAGCAATTGCGATCGTCATCTGTTGCGCAAGCACGGCAATGTTGAGTCCGCCATGTCGGTGTATGTGCCAACGGAGGATGTCACCGAGCCGATACCGGTGCCAAAGTCCGTCGAAGAGAtcgaacagcagcagcggcaacgcGAGGAGGAGGAACGTCGCCGCAAAGCCGAAGAGGCACAAATCGAACGTGAACGTCGCGAACAAGAGAAACGCCAACTGCAGGAACAGGAACAGCAGGAGCAGCTGCTCAAGCAGATCGCTGCCGCTGCGCACATGATGATCTGCCGTACAAGTGTCATCTGTGCGAGAcatgagCAGGagttcaaattgttgttggccaagGGCGCCATCGAAACGGAACTGGAGCCACAGCCGTTGCATTTGGCCAGCCATGGCGGCGATGATGAGGAACGtgatgccgccgccgctgccggcGTCGCTGCTGTCGGCGGTAAATCGGGCAAATATCCCGACTATAGCAATCGGAAAGTGATTTGTGCCTTCTGCATGCGTCGCTTCTGGTCGACCGAAGATTTGCGTCGTCACATGCGCACACATTCCGGCGATCGTCCGTTTCAGTGCGAGATTTGCTTGCGTCGCTTTACGCTCAAGCACAGCATGCTGCGGCACATGAAGAAGCACAACAATCGTCAGTACAATGGCGCCAATGGTCTGGGCGTTGAACATGCGCCTGGCGGTGGCAACTCTGGTTCGGATTTCTCCGATGATGAACAATTGGCAGCAACGCCAACACCgacgccaccaccaccgccgccgccgccatcgtcgtcgacTTCATCggccgcagcaacaacaacaacaactaagtcAAGTGCTCTGGGCGCAATGCATCCACCAAAGAGCCAAGCCAATGAATGGCGCAGCAATCGTCTGTTGTCCAAACATGGTGAGCACAAAGAGAATATTGCTGCCCTGCTATCATCGTCGTCGGCCGATGAGGCGGCCAAATTTCTTGGTgttgaaaagtaa
Protein Sequence: MIATQQQQQQQTATYDERSSNNNSTTATTTQIKMERRDSTTSESSVEQLDLGRTPKKLSTHNAATSTPHITNGSNNNSSNNSASHQLSLELTTTTTTTRKRKMRRAHDSDNDNDCCDDMLIDASTKPTSADEDDKQRQQQPQQTTTMLTPPTTQRTHKRRGSSARLDKRAVVQLVADEPGNTLRKNGNSTQYLLNASDANVTAAAVAAAAAAAAAAAGVASVSHSSSGSAGSSPHGVSSPESLVDEHMKYVCPICDTVSATPHEFTNHIRCHNYASGDTENFTCKICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQNHHHQRHSTSANSQSSTNNNNNNNNNNNNHNNNNSNHHHNNNNLKANNNNSSNNLKRKKSEHSNDLLDADYGPAACPVCKVADFDCLRDLGMHVDNAHPEIPAKCRECSVVFSTHRQLNMHPCTQKIQAARREQFLRHLYYKNKAAVAAGMLSPNPDNDAETPCHVDGMLIKYETNDTKHSHDSKDLADIQSILNMTSSSSTSNFLKNFEQSVNTPSSNYSLDKDEEEAQDTFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAVGPSGPFRCNMCLYTTSDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTTRDEVKRAIIYHPSEDSSCDDPGKKLHLFTGACDFDDDMDLLGFQQHNQPKDRSTPVSHLKDLLADVSGVGVGGAVAAQTKPKLQVKSLDLLLDKSASGAYNNNNNNNNEQHRLNQAAATDGETAPIDLSMDVLDLSKKPNEKCEKSTTDAANDAAAAVAAISPLLSDKSNTPSSLASASPSSIAQLLPKSLASPTSTGQAGLNIPRHPHITTNAVLPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASSAAAMNSFNHLQAYAQAQQHQQHANVSGGAGGGGMGPTPISDHVKYAILSQQLKARRDTDLLQQALAHGSSSIAQNHLLLGASATTNAIKAGQSTSKLSAENEAKPKSSSSSSVPPPPVGAGPQPPQPHTMKSMIAQAESVGKFLKEVASSPFKDESQDLVPVSKLVDNATSNNQMTFNNYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTTPAEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVTEPIPVPKSVEEIEQQQRQREEEERRRKAEEAQIERERREQEKRQLQEQEQQEQLLKQIAAAAHMMICRTSVICARHEQEFKLLLAKGAIETELEPQPLHLASHGGDDEERDAAAAAGVAAVGGKSGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGDRPFQCEICLRRFTLKHSMLRHMKKHNNRQYNGANGLGVEHAPGGGNSGSDFSDDEQLAATPTPTPPPPPPPPSSSTSSAAATTTTTKSSALGAMHPPKSQANEWRSNRLLSKHGEHKENIAALLSSSSADEAAKFLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -