Basic Information

Insect: Phortica variegata
Gene Symbol: -
Assembly: GCA_001014415.1
Location: JXPM01017595.1:1625-11749[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.099 8.2 7.1 1.6 1 23 1549 1572 1549 1572 0.92

2 13 1.1 94 3.8 0.3 1 23 1740 1762 1740 1762 0.92

3 13 0.00016 0.014 15.9 2.7 2 23 1765 1786 1765 1786 0.97

4 13 6.3e-05 0.0052 17.2 0.2 3 23 1794 1814 1792 1814 0.98

5 13 9.6e-07 7.9e-05 22.9 2.7 2 23 1821 1842 1820 1842 0.97

6 13 7 5.8e+02 1.3 0.3 5 23 1855 1873 1853 1873 0.96

7 13 1.6 1.3e+02 3.3 5.5 3 23 1880 1901 1878 1901 0.93

8 13 0.046 3.8 8.1 0.1 2 23 1912 1932 1911 1932 0.96

9 13 6.9e-05 0.0058 17.0 0.4 1 19 1938 1956 1938 1960 0.95

10 13 1.7e-05 0.0014 18.9 2.1 1 23 1968 1990 1968 1990 0.99

11 13 9.4e-05 0.0078 16.6 7.6 1 23 1996 2018 1996 2019 0.96

12 13 0.00018 0.015 15.7 5.4 1 23 2024 2046 2024 2046 0.98

13 13 0.0015 0.13 12.8 6.0 1 23 2052 2074 2052 2075 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.099	8.2	7.1	1.6	1	23	1549	1572	1549	1572	0.92
2	13	1.1	94	3.8	0.3	1	23	1740	1762	1740	1762	0.92
3	13	0.00016	0.014	15.9	2.7	2	23	1765	1786	1765	1786	0.97
4	13	6.3e-05	0.0052	17.2	0.2	3	23	1794	1814	1792	1814	0.98
5	13	9.6e-07	7.9e-05	22.9	2.7	2	23	1821	1842	1820	1842	0.97
6	13	7	5.8e+02	1.3	0.3	5	23	1855	1873	1853	1873	0.96
7	13	1.6	1.3e+02	3.3	5.5	3	23	1880	1901	1878	1901	0.93
8	13	0.046	3.8	8.1	0.1	2	23	1912	1932	1911	1932	0.96
9	13	6.9e-05	0.0058	17.0	0.4	1	19	1938	1956	1938	1960	0.95
10	13	1.7e-05	0.0014	18.9	2.1	1	23	1968	1990	1968	1990	0.99
11	13	9.4e-05	0.0078	16.6	7.6	1	23	1996	2018	1996	2019	0.96
12	13	0.00018	0.015	15.7	5.4	1	23	2024	2046	2024	2046	0.98
13	13	0.0015	0.13	12.8	6.0	1	23	2052	2074	2052	2075	0.96

Sequence Information

Coding Sequence: ATGGTCGCTAACGTGCAGTGTCCTGTGTGCACATTGTACCTGCATGCTGGTATGAACCTCTCCGATCATCTGGAGACACATCCCAAAGAACAAGTTATAAAAGCGCTTGTACAAATGACAATTTCCGGTAATGGCGATAGTATGGGAGCTGTTTTGGCCAATacattaacaaataacaacaaaaataaagaggGCGCTAATGATGAAAAGCAACCAGGTGGTGAACCATTATCGTTAATTGGATCTATGTTGCCAACAACTCCAACCAAAACCACTGAACCATCTAAGTCATACAGTGATGAGTTAAGTTCAATTGCAAGTACAAGTCATGGATCaaaattttcttctattaCGCTGAACACAACATCAGTCCCAGCGACGACGacatcattaacaacaacaactgctagTTCCTTTTCTTCTGCTCCAGTTGCAGTATCTAAAGCGGATCTTACAACACAACAGCCCACCATTAATAAATCGATGATAAAAAGAATCGAAGGAAATGTAACGACACAGCCTATACTACCAGTTAACCCAAATGTTTCAGATACTGCGACATTTGCCGATGAATCCTGTCATGTCCGGGTTCCAACAGCTGCATCTGGCGTTTATCAAAAACTACGACATGGTATACAGAGTACACATTCAAACCGATTTGAAATGCAGCCAATTGAGTCACTCAATGCAACAAGTATAAGTCAATTGCAAACGCAATCGCTACATGTACAACGCGGTACTGTAGAAAATAGTGCAACGTTTTTGCAACCTCCTATGCCGCCCACATCAACACACCTACGCCATACATTTAATTCAACGCAGTCGCAAGTTTCACCttatcatcaacagcaactacaacaactttcGCGACAATTAAGTCAtccacaacagcagcagcaacactaTAAATCGCAAGCGTCactgcaaaagcaacagcagcaaacatCTCAGACTCAGcagctgcaaaatttcaagccTCAAGCAGCTCCTCAACAACACCCCCCTAGCTTGAAGCTTGTATATTCACCTGCTCTGCCCCCACCGCCACCGTTGCagttatttaCACATCAAACGCCGCAACACCAAAAACCACCTCCTGCCTATGGCACCGCAATCAGTCAAATTCGATCTCAACATCACCAAaataggcaacaacaacagcagataACAGTTCATCAAATCTCACCTCCTATTACGTCATCCGTTGCATTACATGGTGCCACAACATCAAAACAAGAATTACAACAAGATAAGTCGCATGCAGACGATTCAAAAGAACCACCGCTGTCCATTGGCTTCAAATTTGAAGGTGATTCAGTGCCATTCACGcacgcatcatcatcaaatatAGTGCACCCAGCTTCTAACCAAAACTCACCCCAacttcatcaacaacaaaagccaatcACATCGAACCTTATGTCATTGCCCATATTGCCAACGTCGCAAAAAGCGATACCAATTATCAGTTCACCGTCTGCATCCAACAACCAGATAAATCCACCCATGAGTAGTGCATTTTGTTCGGCAACAATGGTAGCCTCTCCGTCGTCCGTATTACGTTATGCTGAATCTCCAGTGGCGCACTATTTGGAACGCGATAATGGAGATTTTATAGTACAGGAAACGCCAAAGCACATTGTAGAATGTGTTGAAAAAGAGAATGGAGAATTCTCTGTAATTGAGCGTATATACCATTCACCGCCAAGCGTTCTTCATATACatgacgatgaagaagacgatggagatgatgaagatgatcaACTTCACAACGATGACTCGAACAATGCCAAGCTTTCAAATAAATCACCAATTaaaaagcgacaaacaaaaactccgaaaaaaattcaaaataatgttgACACACATAGAACTGGCCAAAATAAATCTCACCATCTTCATCACACAGACGACGAGGAGGAGTTTATGAGTCTTAGCAGTGGCAGCGAAAGTATTTCGGATTTTGAAAGTAAGATGGTGTCACCGACAGTACAAGTCAGGTCATCGCCTAGTAAAATAAACTCAAGAGGAAAGTCTTCAAATCCGCAACACCAAATGAGCTTGTCAACAACGCCATCAACCAGCGCTGCTGTCGTAACATCAGGTGAATTATGTTCAAACGAAAGCTCGAACAGTAACAGCGTTGCAAGTACAAGTATATCTGACACGAATTGTCAGCCTCGAAAATCCAAGAAAAATACTGTAACTGTACTAAGCGATGTACCACTCAATATGAATGAATACCTTGATTTAGTGGGTAATATTTTAGCATCCAACAAATTCACTACTCAGCGTCCGTTTGCTGCAATGACACCCATTTCGCTGGTAAAAGTCGAGAAAGAGGAACCGCTTGATGAGTATGaacaaactaaattttatGATAGTTATGAGCCAACATCAGCAACTGATGCAGTAGCAGAAGTAACGTCAAACACTGATTTAACGAATACACAATTTAACAGAACGATACCACCTGTAATATCAAATGCCAATGAGACAGAGACTGATGACTTTGTGGCAACTAGTGATAAGCAAGCAATCAATGAAGATCGTAAGCCAACAATTGAATTCGatcagaaacagaaacaacaattgcaCGCGCAAGATATTACTGCATGTAGCCCTGGCACAAACAGTATTCATGTCACAACGAGTGTTATACGCATGGCGACAACAAccagtcaacagcaacaaaactcaCATATGGATAGATCTCAGATAATAAGCCAAGCATTGGACACCCAACAATCCGTACCCGAAGACTTAACTCAGCCTCTTATGAAAATAGAAGTTGAGCCAACAAGTCTTACGCCGCAACGATTTCCACCGCCACCATTGAAACAACGTGGTCCAAAAAAACTGATTAttaagccaaaatcaatacctaagaaaattttaaagactgatgatgatgacgttgctACGACGTCTCGTGCCGCTGTTACAAGTTTGAGTTTGAAATCGAGCACAGACGAAGTTGTATTAATTAAGAACGAGCCAATTACAAATGTTTGCGAATCACACCCAATAACAAATAGCATAttagaaaaacatttaacatcAAAGAACACTGTAAAAATTGAAACTGATCATTGTAAGGGAGAGCAGTTACGTGCCTCTACCTCTGCCTCCAATGATGCGGACGCTCGTGTTTTGCTCGAGTTTGCTAACTCGAAACAACATAAGCCACAAGCTCATGCGGCAAGTGTCAGTGTATCTTCAACATTTGCATCGAATGTGAACAGTAATGCTATAACAATGGCAATGACAAATACAACTGCAGATTTTCCATCAGCCAGTTCAATGTTTTCTAACAATGGTCCTGGAAAGTCAACATCAGCTACGACAACCTCTGCAAATGTTCTTAACTGCACCGATGAGTATATATTGCCAGATCACAATGATATGGATGAGATTGTAATATCTTCATCGTCATATTCGTCACATTCGGCTAGTGATGTTGGAGCCCAACTGCAAACACAGTCACCGTCGCAGCCAGTAGAAACAAGCCTTACGCCACAGTCGgtacaaaatttcaacgattttaattttctctATAATCCTTCCAACGTAACCACTTTCGTGATGGAAGGCAACAAGGCCTCTACCAGATTTACACCGTTCACTTACCAACACCAAAATCCACATGATGCTACAAATGCGGCAACGGTGGCATCTTCCACTTCTGCTTCGTCGGCAATAATTGAGGATTCCTTAAGCGGGTCATCACGTTCACGATTAGCACGCGATAATCAAGTGTCAGCAGCCTCGAATACAGCGACTGCGGGCTCATCTTGGTATCAGCTGCAACAGCCAACAGATTTTAATGCGGCACTTGCGGTGGACTGCAGTGCTGCGGTTGATGGTGTAGCAGATATTGATGGCAGCAAATATCTTGATTTAGATTCATGCAAACGTGAAAATATTAGCAATTGTAATTCACACATTACATCAAATCATCACCCGCCATCGTCGTCAACATCTTCATCAGGTTCTTTTATAGCTGGCACCGAGAGCAGTTTAGCTGGTGGCTGCACTGCAGACGGTCTGAACATACGTACGGATGAAAAAATGCCAGCCAAAGGTGAAATATCAGAGCAGGAAAGCAATTGTGACATTGAAAATTCATGGAGCCAATCTATGTATGGTGATATTTCTGCTCGACTTTTTAGAACATCATTTCCTGGAGTGTATAGTCAGGAGACTGGctggcaacaacaagatgATTACTTCCCTGCGCACGATTTGAGCAATGCAATTATTGCAAGTGGTCAACAGAAGGCAGCTAAGAGttttgattttcGACTTCCTTTGGAAGGAACTACCTCAGCCATAGTGGCGCACAGCAACACAACACCAAACGTTCAAGGCGTACATATATTTCCGCAGCACAACGATGCTATACCGTCGACATCAAAagcttcaaaaaacaaacgaaaacgtGATGCACAAGCACCCACATCGACAATTACGTCCCAACAAAtgatccaacaacaacagtatgtGAACGATGCGGATACGAACGAACCTCAACCCACCACATCAGCCATGTTGATGGCCGGTCCATCAACTGCGTTTACTGCCGCTGGCGGCACTAACTCAACAATTACCTTGACATCGACAGAAAGAAGACAACGTAAAGTTTATAAATGTGATCACTGTGAGGCTACATTCCGCAAGCTTAAAGATCGCAGTGGCCACTTGGTAACTGAACACAATTACGTCCGCCGAAATCGACGTCTTGTGTGCGTGCAAAGTGTGGTGACATCAACGATTACTAGTGTCGATATATCTGCTGTAGCGTCATCTAGTACGAACATTTTGGAGccgcaaataaaaatggacGAATCTGAAGATCTAAAGCATCATATCGTTAAAATAAAGATGGAACATTgcagcgaacaacaacaactgaatcAACAATTACAGGAACATCAATCGATAGCATTGACAATCAGTGAGCATGAAGTACGCGCCAAAACAGAGTTTGCCGACGTTAAAGATTCCAGTTTGACTGCAAGCACTTCGGGTGTCCTAGTGCCGCAAGATCAAGTTGCTGACACAAAGCTGAGTTTACAAAGCACTTTGTATGGCAAACATATTCCGGCCTCCAAGCTGGCGACATTATACCGCATGCTTATTGGATACAACATATCGAAGTTAAGACAGAATGGCAACTTGAGTGAGTTGGAACAAAAAGTTATGGAAAATTCGATATTTTTGTGCTATGTTTGTCGCACAAGTTTTCCATCAGTAAAGTTGTACGACGCACATTTAACGGAGCACCCAGCTGAGTGTTTCACTTGTGGCAAAAAGTTCTATCGTTGGAAGAATTTTTCCTTGCATCTTAAACGACATTTGGGTTGGAAAGAATTCGGTTGTTATGTGTgtgataaaaaatttgttgtgcgCAGCGCGTTGGTTGAGCATATGCGTATGCACACTGGTCAGACGCCTCTCAAATGCGGAGTATGTGGCAAACGTTTTAAACGTTATTCGAATTTGACTCAACATCGAAAACGTCACACTAAGCAGATTGTGCGCAAAAAAGAATACGTCTGTCACTGTGGCGAAGTGTTACCCTCGAAAGCTCGTTATTTGTGGCACAAGGAGACGCACGACTCAAAGCCAAAGTGCTGTCCCTACTGTTGTGATCGGTTTATACACGCTAATTCGTTGCGTCGCCATATACGACTTGCACACTCCGATAAGTTCGACTATACTGAGCCGATGGAGTGTCCCATGTGTAAGCAAGTATTCGCCAAAACATCGATAAAGGCGCATATGGCCACTCACTCGATGGGCACACAGTATGATTGCGCTATTTgtaataaatcattttcaacCAAATGGAATCTAAAGATGCACTCATGGGTACATGCAAATCGTACAGCCAAACCCTTTAAATGTGAACACTGCCCTAAGGCGTTCATACGCGAACTTGATTTCAAAAATCATATGAACTcacataagcaaataaaaccgTATACATGTGAGTATTGCGGCTGTAAGTTTATAcgcaaatataattatatgcGTCATCGGCGTGAACATCATGGCAAGAAGAAATTTACATGCGATCTTTGCGACAAATCCTTCCATCGGCACTACTATCTTATTGAACATCGACGCATACACACCGGTGAGCGACCGTTTCAGTGTACTATATGCGGCAAAAGTTCAACCACAAAGACGAATCACAATAAACATTTGAAGATACATCATTCACGCGATCCCTTCACTGTGGAGGTGTAA
Protein Sequence: MVANVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTISGNGDSMGAVLANTLTNNNKNKEGANDEKQPGGEPLSLIGSMLPTTPTKTTEPSKSYSDELSSIASTSHGSKFSSITLNTTSVPATTTSLTTTTASSFSSAPVAVSKADLTTQQPTINKSMIKRIEGNVTTQPILPVNPNVSDTATFADESCHVRVPTAASGVYQKLRHGIQSTHSNRFEMQPIESLNATSISQLQTQSLHVQRGTVENSATFLQPPMPPTSTHLRHTFNSTQSQVSPYHQQQLQQLSRQLSHPQQQQQHYKSQASLQKQQQQTSQTQQLQNFKPQAAPQQHPPSLKLVYSPALPPPPPLQLFTHQTPQHQKPPPAYGTAISQIRSQHHQNRQQQQQITVHQISPPITSSVALHGATTSKQELQQDKSHADDSKEPPLSIGFKFEGDSVPFTHASSSNIVHPASNQNSPQLHQQQKPITSNLMSLPILPTSQKAIPIISSPSASNNQINPPMSSAFCSATMVASPSSVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKENGEFSVIERIYHSPPSVLHIHDDEEDDGDDEDDQLHNDDSNNAKLSNKSPIKKRQTKTPKKIQNNVDTHRTGQNKSHHLHHTDDEEEFMSLSSGSESISDFESKMVSPTVQVRSSPSKINSRGKSSNPQHQMSLSTTPSTSAAVVTSGELCSNESSNSNSVASTSISDTNCQPRKSKKNTVTVLSDVPLNMNEYLDLVGNILASNKFTTQRPFAAMTPISLVKVEKEEPLDEYEQTKFYDSYEPTSATDAVAEVTSNTDLTNTQFNRTIPPVISNANETETDDFVATSDKQAINEDRKPTIEFDQKQKQQLHAQDITACSPGTNSIHVTTSVIRMATTTSQQQQNSHMDRSQIISQALDTQQSVPEDLTQPLMKIEVEPTSLTPQRFPPPPLKQRGPKKLIIKPKSIPKKILKTDDDDVATTSRAAVTSLSLKSSTDEVVLIKNEPITNVCESHPITNSILEKHLTSKNTVKIETDHCKGEQLRASTSASNDADARVLLEFANSKQHKPQAHAASVSVSSTFASNVNSNAITMAMTNTTADFPSASSMFSNNGPGKSTSATTTSANVLNCTDEYILPDHNDMDEIVISSSSYSSHSASDVGAQLQTQSPSQPVETSLTPQSVQNFNDFNFLYNPSNVTTFVMEGNKASTRFTPFTYQHQNPHDATNAATVASSTSASSAIIEDSLSGSSRSRLARDNQVSAASNTATAGSSWYQLQQPTDFNAALAVDCSAAVDGVADIDGSKYLDLDSCKRENISNCNSHITSNHHPPSSSTSSSGSFIAGTESSLAGGCTADGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISARLFRTSFPGVYSQETGWQQQDDYFPAHDLSNAIIASGQQKAAKSFDFRLPLEGTTSAIVAHSNTTPNVQGVHIFPQHNDAIPSTSKASKNKRKRDAQAPTSTITSQQMIQQQQYVNDADTNEPQPTTSAMLMAGPSTAFTAAGGTNSTITLTSTERRQRKVYKCDHCEATFRKLKDRSGHLVTEHNYVRRNRRLVCVQSVVTSTITSVDISAVASSSTNILEPQIKMDESEDLKHHIVKIKMEHCSEQQQLNQQLQEHQSIALTISEHEVRAKTEFADVKDSSLTASTSGVLVPQDQVADTKLSLQSTLYGKHIPASKLATLYRMLIGYNISKLRQNGNLSELEQKVMENSIFLCYVCRTSFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCGVCGKRFKRYSNLTQHRKRHTKQIVRKKEYVCHCGEVLPSKARYLWHKETHDSKPKCCPYCCDRFIHANSLRRHIRLAHSDKFDYTEPMECPMCKQVFAKTSIKAHMATHSMGTQYDCAICNKSFSTKWNLKMHSWVHANRTAKPFKCEHCPKAFIRELDFKNHMNSHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGKKKFTCDLCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01195496;
90% Identity: iTF_01195496;
80% Identity: -