Basic Information

Insect: Phortica variegata
Gene Symbol: -
Assembly: GCA_001014415.1
Location: JXPM01004246.1:19122-21382[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00014 0.012 16.1 0.4 2 23 282 303 281 303 0.96

2 10 0.0014 0.11 12.9 0.6 1 23 310 333 310 333 0.94

3 10 0.0039 0.32 11.5 0.4 1 23 344 366 344 366 0.95

4 10 5.1e-05 0.0042 17.5 2.4 1 23 377 399 377 399 0.99

5 10 1.2e-05 0.001 19.4 3.0 3 23 414 434 413 434 0.98

6 10 0.00045 0.038 14.4 0.4 1 23 462 484 462 484 0.97

7 10 5.9e-05 0.0049 17.2 0.1 2 23 491 512 490 512 0.96

8 10 0.003 0.25 11.9 7.4 1 23 518 540 518 540 0.98

9 10 6.5e-08 5.4e-06 26.5 1.1 1 23 546 568 546 568 0.99

10 10 0.0014 0.12 12.9 0.7 1 23 574 596 574 596 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00014	0.012	16.1	0.4	2	23	282	303	281	303	0.96
2	10	0.0014	0.11	12.9	0.6	1	23	310	333	310	333	0.94
3	10	0.0039	0.32	11.5	0.4	1	23	344	366	344	366	0.95
4	10	5.1e-05	0.0042	17.5	2.4	1	23	377	399	377	399	0.99
5	10	1.2e-05	0.001	19.4	3.0	3	23	414	434	413	434	0.98
6	10	0.00045	0.038	14.4	0.4	1	23	462	484	462	484	0.97
7	10	5.9e-05	0.0049	17.2	0.1	2	23	491	512	490	512	0.96
8	10	0.003	0.25	11.9	7.4	1	23	518	540	518	540	0.98
9	10	6.5e-08	5.4e-06	26.5	1.1	1	23	546	568	546	568	0.99
10	10	0.0014	0.12	12.9	0.7	1	23	574	596	574	596	0.95

Sequence Information

Coding Sequence: ATGGAAATGAGTTCGATAGACAGCGATTTCGAATATATGTGCCGTACTTGTATGCGGCGTGATGAGATGCAAACGGAatcattgcaattgcaatcaTTGTACGATTGTCCACTGGGCGAAGTGGGCATTGTCGATATGCTTGTCACAACAACGCCACAATTGGTGGCGCCTGTGCCAAGTGATGGCCTGCCACAGGTAATATGTATGAGCTGCTTTGAACGACTAGTAGAGGTACAACAGTTCCAGGAGATGTGCCTATCGTCCGACCGTTGCCTGCGCGGTTTCACAAATGGATACACCAATGTCGATGCACTGGTGGTGGAAAACACAGATACCTTGGAATACAAATACTCAGTGGAATTGGATAGCCTGGAGGAGGAAGAGATACAAAGCGAAGAAATGTCTGAAAATATGAATATAACAAATACCGAATTGGATGATAAGGAACTGGTGGAACAGGTTGACGATATCATTGAATGCATTGAAATAGTAGAGGATCCGCTATTGAATGATTTAATATCGGCTGAAGAGACGCCGGCGACCATCGGTGAATTTACGACAAATGCGGAACAGTTTAAAATAGACGAATATGCGGCTGAGATCAATGTTATCGATATGGCTGAGCATAAAGAAGAGACAATAAATATAGAAGAAAATCAGCAGACACATACGCTGTCTACGGCGATTGTGACAGTGGGCGAGGATGGCATTGAAACTGATGAACATAAACTAAGTGAAACGCAGACATTTGATGCAAGTTTAGATGATTACATACGAGTCGATGGCGAAATTCCAACCATAGAACCAAAACAAACCATCACACGTAAAAGTTATCCACAGACGCCGTGTCCCATCTGCAGCAAAACTTTCTATGGCAAATATCGTATGGAACGTCATCTACAGGTACATGACACGGATGGCAGACCGTTTGCATGTACGAAATGTGAATATCGTTTCATAACGGTGGACAAATTAAAAGCACATGAAACAAAAGTGCATAATGCGACGCATTATGATCTGAAAAAGACATATCCCTGTGATGAGTGTACATGTGTGTTGTCGAATGAATCGTCGCTGGCCACACACAAAGCATTACATGCAGCGGGCATGTCAAGTGAAGCGCTCAAATATACATGTCAATTTTGtggtaaatattttgattCAAATCAGTTGCTAAATTTGCACAAACGTTCGCATCGTCGTATCAGTCTAATGGCAAATGGTTTGGCGCCGAATATTTGTCGTTACTGTAATAAAACGTTCCAGCATCCACGTACGTTGCAAGAGCATATACGTACACATACCGGTGAGCAGCCGTATCTGTGTTTTGAATGTGGCANCGCACACATACCGCATCTGATGCGTCATACGGGTGAATTGCGTTACGAGTGTCCCGAGTGTCCGAAACGTTTTCCCTGCCTCAGCGATCTGGCGTCGCACAAGTCTGTGCACAATAAAGTGAAGCGTCAGGTGTGCGATATCTGTGGCGCTGCCTTTGTTAAGCCGTATCAGTTGAAGACACACAAAATGTACCATACTGGCGATAAGCCACATAAATGTGAATATTGTGAAATGCGTTTTGTTTGCGCCGATCATATGCGTCGTCATATGCGCACACATACTGGAGAAAAAccatataaatgtaaatactGTGATCGTGCCTTTGCCCAATCGAATGATCTCATCAAACATTTGCGTTCGCATCTTGGCGAGAATGTTTACAAATGTGAGCTTTGTCCGAGCGGTTTTCGTTTGGCAAGCGAATTGCGTAAACATTTTACACAGCATAAAAACGATGATGATTTGACGCGTCAACGTAATTTAACGGCATTGCTTGAAGAAGAGGCTAgacttaaaatcaaatttaccAGCTCACCGGCAGCGATTGCCAGCACTGGCTGTGGCAGTCAATACAGCAGACGTGTTGTGAGCACAAATCAAAGCGGTGCCGCGACTAGAAATGGCGATCAAGATGATGGCGCCGGTGACGATGGTGGCGATGGCGACAATTGTCACGATATAGCCAGTATTGTAGAGAGCATTGAGCAATGa
Protein Sequence: MEMSSIDSDFEYMCRTCMRRDEMQTESLQLQSLYDCPLGEVGIVDMLVTTTPQLVAPVPSDGLPQVICMSCFERLVEVQQFQEMCLSSDRCLRGFTNGYTNVDALVVENTDTLEYKYSVELDSLEEEEIQSEEMSENMNITNTELDDKELVEQVDDIIECIEIVEDPLLNDLISAEETPATIGEFTTNAEQFKIDEYAAEINVIDMAEHKEETINIEENQQTHTLSTAIVTVGEDGIETDEHKLSETQTFDASLDDYIRVDGEIPTIEPKQTITRKSYPQTPCPICSKTFYGKYRMERHLQVHDTDGRPFACTKCEYRFITVDKLKAHETKVHNATHYDLKKTYPCDECTCVLSNESSLATHKALHAAGMSSEALKYTCQFCGKYFDSNQLLNLHKRSHRRISLMANGLAPNICRYCNKTFQHPRTLQEHIRTHTGEQPYLCFECGXAHIPHLMRHTGELRYECPECPKRFPCLSDLASHKSVHNKVKRQVCDICGAAFVKPYQLKTHKMYHTGDKPHKCEYCEMRFVCADHMRRHMRTHTGEKPYKCKYCDRAFAQSNDLIKHLRSHLGENVYKCELCPSGFRLASELRKHFTQHKNDDDLTRQRNLTALLEEEARLKIKFTSSPAAIASTGCGSQYSRRVVSTNQSGAATRNGDQDDGAGDDGGDGDNCHDIASIVESIEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01195453;
90% Identity: iTF_01195453;
80% Identity: -